Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19135

FASTA Sequence
Unigene ID: UN19135Length: 1123 SSR 
GGAGGGGAAAAAAAAACCTAAAACCTGAGAATCAATCGTCCTCGAATCGAATAAAATCCATCAAACCCTAATTTTTCATCTTAGGC
TTCGGAGCAGATTATTGTTTTACTTCTTGTGGTGCCATAGCTTCTGAGAAAGATAGATAGATAGAGATAGAGAGAGAGAGAGATGG
ATTGGGATAGCGTTGCCGCTGAGGATGTGATCGAGGCGCTAAGAGAGGTTGAGTGGTCGACGCGTCCTCGTTCTTTCGCCGAGTTC
TTCTCCAGATTCGCCTTCCCTCGCTCTTTCTCTAAGTGGACGAGTCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTACTT
CATACTGTTGATTCTCGTTCTGGGTCTTGCACTTATCACGAGACCTCTGGCCATTCTTGGTGCTCCTCTTACTGCCCTAAGCTTAG
CTTTCCTTAACGACAGCTTTGCCGCTACTTTTAATGAGAAGATGATCCGGACCATTAGGCATTTCTCGCCACATTTAGCTGCAAAG
ATGAGACCTCCCCACATGCCCGTCATTCGTGGGCGATCTGCAGCTAGAAAGAAGGTTTACGTTTGTGGCAAACCACGTTTGGTATT
TGTCTTGCTTGGTTTAACCGCGCTTTGTCTTGTGGTTCACTTCCTGCGGTTTGTTATGGGTCCTCTATGCATTTGCCACTGCCCTT
CTCATGATCATTCTTCACGCAAGCCTGAGAACTCCAAACCTCAAGGCACGCCTGAACACATTCCGTGAAGAATTCAGGGCTGTCTG
GCGTAACTACAGTGAACTTTAAGTCAACAAAAGAAGCCTTCATTCTTGAAGCAAAACCAAGCGGGGATATCACTGTTTCAAGTAAA
GGGCCGCATAAATTCCGATTCCTTGTCATGTTGGCAAAAAAACAATCGCAGTTATTTGTTAACACTTCTAGTTAGCTAGTAATTGT
AAGGCCGCTTGTCAGTCTGATGGAAGATGCGCCTCCTCAGGGTTGAAATCGCAGATAGAATATAGTGTTGTGCTCTTAAGGTTCTT
GTAAGGCTATATTGCTCATCATCAGTTCCATTGTAATGATTGTTCCATACTCGTGTTTTGTAGTGTGTTATTAATTCAGTTTTACA
ATATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_001189860 cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana]7388e-076
XP_002882727 prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata]7307e-075
NP_974282 PRA1 family protein A3 [Arabidopsis thaliana]7281e-074
NP_850778 PRA1 family protein A2 [Arabidopsis thaliana]6974e-071
XP_002871193 prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata]6941e-070

Swiss-Prot top hits (Blast detail)Scoree value
Q8W115 PRA1 family protein A37285e-076
Q8GWC3 PRA1 family protein A26972e-072
Q9LZM7 PRA1 family protein A15351e-053
P93829 PRA1 family protein D1335e-007

TrEMBL top hits (Blast detail)Scoree value
B9HT56 Predicted protein5746e-057
C5XPS8 Putative uncharacterized protein Sb03g0398105702e-056
B9HMM4 Predicted protein5674e-056
A2Y5C3 Putative uncharacterized protein5665e-056
B7E4Q0 Os05g0455600 protein5665e-056

Arabidopsis top hits (Blast detail)Scoree value
AT3G11397.1 PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3)7284e-077
AT5G05987.1 PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)6972e-073
AT5G02040.1 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)5351e-054
AT5G02040.2 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)5351e-054
AT1G04260.1 MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7); protein binding1334e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
86  50%
 
74  33%
 
122  17%

Unigene MembersMember information