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Information for unigene UN19137

FASTA Sequence
Unigene ID: UN19137Length: 1568 SSR 
GGGTAAATCAGGGAAGGAGTCATTTTAAATTTAAGCTTCTGCGTCTCCTTTGTGAAAGGAGGAGAGAGAGAGAAAGTCAACGGCCA
TGGCTGGTCGTAGAGACAGAACCCAACAGCTCCGTGGATCTCGAATTGCGATCGCCATCCTCATCGGTATCATCATCGGCTGCGTT
TGCGCCGTTCTGTTCCCCAACGGCTTCTTCAACTCGAGCTCGTCGATCACAGTTAATGAACGCCTACAGACTGGATCCTCTTCTTG
TGAATCACCCGCACGTATCAAGATGCTGAAATCAGATTTTGCATCTCTCTCAGAGAAGAACGCAGATCTGAAGAAGCAGGTCCGGG
AGCTAACGGAGAAGCTGCGTTCAGCTGAGCAAGGATCAGACAACGCAAATAAACAGGTTCTATCTTTAGGACCAAAGATCAAGCCT
GGTCCTTTCGGAACCGTCAAGAGCCTGAGAACCAATCCAACCATCCTCCCCGACGAATCCGTAAACCCGAGACTAGCAAAGATCCT
AGAGGACATCGCCGTCGATAAAGAGGTGATCGTGGCACTCGCAAACTCAAACGTGAAAGCAATGCTAGAGGTTCAGATCGCCAGCG
TGAAGAGACTGGGCATCACTAACTACCTGGTCGTCGCTTTGGACGATTACATTGAGAATTTCTGTAAATCGAACGACGTCGCTTAT
TACAAGAGGGATCCGGACAAGGACGTGGACACGGTCGGGAAACCGGAGGGAACCACGCCGTCTCCTGACTGAAGTTCCGTGTGTTG
AGAGAGTTCTTGCAGCTCGGTTACGGCGTTCTCCTCTCGGACGTGGACATTGTCTTCTTGCAGAACCCGTTTAGGCATCTGTACCG
AGACTCTGACGTGGAGTCGATGAGCGATGGGCACAGCAACATGACGGCTTATGGTTTCAACGATGTGTTTGACGAACCGGCCATGG
GATGGGCTCGGTACGCTCACACCATGAGGATATGGGTTTTCAACTCTGGTTTTTTCTATCTGAGACCTACCGTTCCTTCGATAGAG
CTGCTTGATCGTGTGGCGGATAGGCTCTCCAAGGCTAAACTGTGGGACCAAGCGGTTTTCAACGAGGAGTTGTTTTATCCCTCGCA
TCCTGACTACGTTGGGCTGCATGCTTCGAAGAGGGTGATGGATATGTATGAGTTTATGAACAGTAAGGTGCTTTTCAAGACTGTTG
GGAAGGATCAGGAGCTGAAGAAGAAGGTTAAACCGGTGATTGTTCATGTGAATTACCATCCGGATAAGCTTAATAGAATGCAAGCT
GTGGTTGAGTTCTATGTAAACGGTAAGCAAGACGCGCTTGATAGCTTCCCTGATGGTTTTGAATGATGATATGATTCATTCACCTG
AAAAAAAAAACAGGGTAGGCTCAAAAAGTTTCTTGATATTCTGTGATTCTAATTATACTTTTCACGTCTTCTTTTTTTTTGTATTA
CGAATTTTGTGTAACTTATGACTACGATCTCAAGTCTTTTTTTTTTCTTTACATCTCTGTTCTTGTTACATGATGAACCCTTTTTC
TTCCACATTGTTCTCTCTGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564082 Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]10373e-110
XP_002893043 hypothetical protein ARALYDRAFT_472163 [Arabidopsis lyrata subsp. lyrata]10346e-110
XP_002889008 hypothetical protein ARALYDRAFT_476650 [Arabidopsis lyrata subsp. lyrata]9729e-103
NP_565102 Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]9692e-102
AAM63606 unknown [Arabidopsis thaliana]9673e-102

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LN62 At1g1936010372e-110
Q9C9Q5 At1g75110/F9E10_49691e-102
Q8LCK7 Putative uncharacterized protein9672e-102
B9R7R0 Putative uncharacterized protein9296e-098
A9PCD2 Putative uncharacterized protein9233e-097

Arabidopsis top hits (Blast detail)Scoree value
AT1G19360.1 LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RRA2 (REDUCED RESIDUAL ARABINOSE 2) (TAIR:AT1G75110.1); Has 165 Blast hits to 162 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).10387e-113
AT1G75110.1 RRA2 (REDUCED RESIDUAL ARABINOSE 2)9706e-105
AT1G75120.1 RRA1 (REDUCED RESIDUAL ARABINOSE 1)8433e-090

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
85  71%
 
111  14%
 
101  14%

Unigene MembersMember information