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Information for unigene UN19147
| FASTA Sequence |
| Unigene ID: UN19147 | Length: 1030 |
| SNP | GGATCTCTCTCTTTCCCTGTTTCTGAGATTTTCTTCGGCTTTTTTTCCCCTGTCTGTATCTTTGTCATTGTTATCGCAGATCTCGA
GGAAAGTTTACTCATCGATTCGAAGTTTGTGTGTGTTTGTTTGATTGTTTTTTTTGCGATGGGATCGTCGTCGGGGCAGCCAGAAT
TTGATTACTTGTTCAAAGTGTTATTGATCGGAGATTCTGGTGTTGGGAAAAGCTCTCTCTTGTTGAGTTTCACATCTAATACCTTT
GATGATCTTTCTCCCACTATCGGTGTGGATTTTAAGGTTAAGTATCTTACCATTGGAGACAAGAAACTCAAGCTTGCCATTTGGGA
TACAGCTGGGCAAGAGAGGTTTAGGACGCTAACAAGTTCATATTACAGAGGAGCTCAGGGCATAATAATGGTGTATGATGTGACAC
GACGAGACACTTTCACAAATCTATCAGATATATGGGCCAAGGAAATCGACCTGTACTCCACTAATCAGGATTGCATCAAGATGCTT
GTTGGCAATAAAGTCGACAAGGAGAGTGAAAGAGCTGTCTCTAAAAAAGAAGGCATTGACTTTGCTCGGGAGTACGGATGTTTGTT
TCTCGAGTGTAGTGCAAAGACTCGTGTCAACGTTGAGCAATGTTTCGAAGAGCTTGTTCTTAAGATTTTGGAAACGCCTAGTCTTA
CTGCTGAAGGTTCGTCTGGAGGGAAGAAGAACATCTTCAAACAGAACCCAGCACAAACGAGCAGTGCTTCATCGAGCTACTGCTGC
TCTTCTTAGACATGGGCTTTACGGTTTATGATGCAAAGTGCACTCTTGTTTGTCTTCTTGCTTTCTTGTTCTCGGTTTCTCTGTTT
CCTAAAAATACTGCAGCATTCCGTCTTGGATGTAAAAATCTTAACCCTGATTTCAAAGTTGTGTTCCCTGTTTTTCTAGTCTGGAA
CCATTCCGTCTTATTCAAAACAAAATGTTATTTTTACTTGATCAAAGGCTGAAAAAATAATTGAAAGTGAAGGCAGTTTAGTAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002893966 hypothetical protein ARALYDRAFT_473785 [Arabidopsis lyrata subsp. lyrata] | 1084 | 5e-116 |
| NP_175056 Ras-related protein Rab-18 [Arabidopsis thaliana] | 1077 | 3e-115 |
| XP_002520256 protein phosphatase 2c, putative [Ricinus communis] | 958 | 2e-101 |
| ACU23007 unknown [Glycine max] | 955 | 5e-101 |
| XP_002267426 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] | 950 | 2e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P36862 GTP-binding protein yptV3 | 583 | 3e-059 |
| Q5ZLG1 Ras-related protein Rab-18 | 544 | 9e-055 |
| Q0IIG8 Ras-related protein Rab-18 | 540 | 3e-054 |
| Q9NP72 Ras-related protein Rab-18 | 540 | 3e-054 |
| Q5R5H5 Ras-related protein Rab-18 | 540 | 3e-054 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O23657 AtRab18 | 1077 | 2e-115 |
| B9S2N7 Protein phosphatase 2c, putative | 958 | 1e-101 |
| C6TJB7 Putative uncharacterized protein | 955 | 3e-101 |
| C6SWE3 Putative uncharacterized protein | 947 | 3e-100 |
| B9S2N6 Putative uncharacterized protein | 936 | 5e-099 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G43890.1 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding | 1078 | 1e-117 |
| AT1G43890.2 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding | 1078 | 1e-117 |
| AT1G43890.3 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding | 1078 | 1e-117 |
| AT5G03530.1 RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding | 804 | 6e-086 |
| AT3G09910.1 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding | 718 | 6e-076 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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