Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19174

FASTA Sequence
Unigene ID: UN19174Length: 1115 SSR 
GGACCTCTCTCTCTCTCTCCTCAAAACGCTATCGAAGAAAAAAGCTATTTGTTCTGTTTCGAAAGGAAGAGAAAAAGTAAAAAAAA
ATCAGTGCTGAGAGTCTTGAGACAGTGAGGCTTTGGTAAGACAACGAGAAGTTTTTGCGGTGGAAGAGACCTAACAATGGGAGAAG
AGGATTCAAAGGCAGCCGTTGAGCCAACAGCAACAGAGTCTAGTTCTCTGGAAAAGACATCAGAGGCTGTGGCAGGAAACAAGGAG
GATGAGAATGCTGGAGGTAAGGGAACACAAGAAGAACTTAAGAAAGATGAGGAGATGGCTGAACCAGAGAAAATGGAGATAGATGC
TGAGACTGAAAAAGCAGTATAGGCGAAATGAGATCCCTAAGTTACCTCGACGCCCACTTCAACGAACTGCACGGCCTACCTGACTC
TTTCGTCTTGCTCACAAACCTAGAGTACTTAAACCTAAGCAGTAACTTCAGCGACCTCAAGGATCTCCCTTCCTCATTCGGCGACC
TCATAAGCCTCCAGAAACTGGACTTGAGTAACAACCAAATCCACTCCCTCCCAGACACTTTCGGCACTCTCGAGAGCCTGGTGGAA
CTGAACGTGGACCAGAACCCGCTCGTTGTCCCACCATTGGAAGTGGTGAAGGAAGGTGTGGAAGCTGTGAAGTTGTATATGGGTAA
GAGAAGGATCACTATGTTGGAAGAAGAAGAGAGGAGGAGGTTGGAGGAGGAGATGGAGCAGGCGAACGCTGGTTGGATCACACGAA
CCACCTCGAAGCTGAAATCTTATGTTTCAGATGTTTCTGAGTATCTCAATCCGACTTCTCCTCGAGACCCTTACCTTGAGAGAGAA
CTATGAATGTGACTTTGGCTTTGAAAAAACGATTCTGCTCTCCTTTTGGCTGGTTTTGTCTCATTATCTCTCTTTTCAGTCAGTAT
ATAATGAAGGGTTCTCTCTTCGTTACGTTTGTGATTCTTCTGGCAGGTTATACCTGTCATTTAACTTGGGTTCATTCTTAAGATGA
ACCTTCTTGGATTTTGCCGGTTTTTAAAGAAAAAACAAATGTTTTATGGGTTAATAAAAGCTCAAAGGAGTTTAACTGAGTTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002884842 hypothetical protein ARALYDRAFT_317922 [Arabidopsis lyrata subsp. lyrata]7566e-078
AAG50968 hypothetical protein; 91861-89496 [Arabidopsis thaliana]7477e-077
NP_187741 ras group-related LRR 9 protein [Arabidopsis thaliana]7477e-077
XP_002873228 leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]6652e-067
NP_196204 plant intracellular ras group-related LRR 1 [Arabidopsis thaliana]6634e-067

Swiss-Prot top hits (Blast detail)Scoree value
Q5ZLN0 Leucine-rich repeat-containing protein 401712e-011
Q54XZ5 Probable serine/threonine-protein kinase DDB_G02785091641e-010
Q6DHL5 Leucine-rich repeat-containing protein 571613e-010
Q80ZI6 E3 ubiquitin-protein ligase LRSAM11578e-010
Q8C0R9 Leucine-rich repeat and death domain-containing protein LOC401387 homolog1523e-009

TrEMBL top hits (Blast detail)Scoree value
Q8VYG9 Plant intracellular Ras-group-related LRR protein 97475e-077
Q9C769 Putative uncharacterized protein F11B9.227475e-077
Q9FFJ3 At5g058506633e-067
B9RAU9 Leucine-rich repeat-containing protein, putative5477e-054
B9IEY8 Predicted protein5442e-053

Arabidopsis top hits (Blast detail)Scoree value
AT3G11330.1 leucine-rich repeat family protein7482e-079
AT5G05850.1 leucine-rich repeat family protein6641e-069
AT1G12970.1 leucine-rich repeat family protein3907e-038
AT3G26500.1 leucine-rich repeat family protein3468e-033
AT4G26050.1 leucine-rich repeat family protein2527e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
111  33%

Unigene MembersMember information