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Information for unigene UN19180
| FASTA Sequence |
| Unigene ID: UN19180 | Length: 871 |
| SNP | TCATCCAACCTTCAGATATAAATTTTATTACATACCCGATTCCGATCTTAATTCCCTGAAAAAGAATAAGAAAATCTCTAATGGTG
TCGTCAGGTTCTCAAGTGCTTCCGGTTTCCACCACCACTCAGCCCCCAAACTTAACCGAATCGCAACCTCCAGCCGTTGGTGCATT
TGTGAACCGCTTCACCGAAACGATCCGTGATGGTGTGTCCCGTAGCCGACCATGGTCAGAGCTCCTCAATCGATCCGCCTTCACCA
AACCGGACTCTCTTTCCCACGCAGCGTTGCGACTCCGGAAGAATTCCTCATATTTCAGAGTGAATTACCTTTGCATCGTATCTCTC
ATCATCGCTTTCTCTCTCCTCGCCCATCCCTTCTCTCTCGTGCTCCTCGCGTGCCTCGCCGCTTCTTGGCTCTTCCTCTACCTCTT
CCGTCCAGCCGATCGACCTCTCATCCTCTTGGGCCGATCTTTCTCCGACCTCGAAACTCTCGCTGCCTTAATCCTCTCCACAATCG
TCGTCATCTTCTTCACCAGCGTCGGATCTGTACTCATATCCGCCCTCATGGTCGGCGTAGCCACGGTCTGCGTCCATGGTGCCTTC
AGAGCTCCCGATGATCTCTTCCTTGACGAACATGATCCTGCCGCCGCCGGCTTCCTCTCAACATTCATCGGTGTTCCTACGTCTTC
CTCTGCCTCCTCAGGGCCTTCCGCCGTATAGCGATCCGTCTCAGAATCTAATAGTATTCTTCTTCTTCGTGAAGATTGTTTGTTGT
TAGTATCATTTCTCTGTGAACCTTTGGCCATTGTTGCAATGTAATTTCTGTTTTTTTTGTTTTGAACTACTTAAAACGCCGTGCAT
CTCACTTGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002870908 hypothetical protein ARALYDRAFT_907986 [Arabidopsis lyrata subsp. lyrata] | 815 | 6e-085 |
| NP_195784 PRA1-like protein B5 [Arabidopsis thaliana] | 767 | 2e-079 |
| XP_002526684 Prenylated Rab acceptor protein, putative [Ricinus communis] | 631 | 1e-063 |
| XP_002278095 PREDICTED: hypothetical protein [Vitis vinifera] | 631 | 1e-063 |
| NP_181370 PRA1 family protein B4 [Arabidopsis thaliana] | 630 | 2e-063 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9M012 PRA1 family protein B5 | 767 | 1e-080 |
| O80915 PRA1 family protein B4 | 630 | 8e-065 |
| Q9SIY7 PRA1 family protein B2 | 591 | 3e-060 |
| Q9LYN0 PRA1 family protein B1 | 582 | 3e-059 |
| Q9FLB6 PRA1 family protein B3 | 558 | 2e-056 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SL15 Prenylated Rab acceptor protein, putative | 631 | 9e-064 |
| A9PCQ1 Putative uncharacterized protein | 610 | 2e-061 |
| B9S480 Prenylated Rab acceptor protein, putative | 610 | 2e-061 |
| A9PDZ8 Predicted protein | 606 | 7e-061 |
| B9HHW1 Predicted protein | 600 | 4e-060 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G01640.1 PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) | 768 | 7e-082 |
| AT2G38360.1 PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) | 630 | 7e-066 |
| AT2G40380.1 PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) | 591 | 2e-061 |
| AT3G56110.1 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) | 582 | 3e-060 |
| AT5G05380.1 PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3) | 558 | 2e-057 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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