RadishBase

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Information for unigene UN19198

FASTA Sequence

Unigene ID: UN19198	Length: 1137	SSR
GGAAAAACATTTCCATCATCGATTCTTCCGGCTTGCTCTCAAAAGAGTAAAATTCTAAGTTGATCGGAAGCGCTAGGGATCTGTGA AGAGAGAGAGAGCAATGGCGAATCGAATAGACCACGAGTACGATTACTTGTTCAAGATCGTCCTCATCGGCGACTCCGGCGTCGGC AAATCCAACATCCTCCCCAGATTCACCAGAAACGAGTTCTGCCTCGAATCCAAATCCACCATCGGCGTCGAATTCGCCACCAGAAC TCTACAGGTTGAAGGCAAAACAGTGAAGGCTCAGATTTGGGATACAGCAGGGCAAGAGCGTTACAGAGCCATCACCAGCGCTTACT ACAGAGGAGCCGTCGGAGCTCTCCTCGTCTACGACATCACCAAGAGGCAGACCTTCGAGAACGTCCTGAGGTGGTTACGCGAGCTC AGGGACCACGCCGATTCCAACATCGTGATCATGATGGCCGGTAACAAATCGGATCTGAACCACCTGAGATCCGTTGCTGATGAGGA CGGGAGGTCTCTGGCTGAGAAGGAAGGTTTGTCGTTTCTGGAGACGTCTGCTTTGGAAGCGAGTAACATCGAGAAAGCGTTTCAGA CTATATTGTCTGAGATTTATCATATCGTGAGCACGAAAGCGTTGGCTGCGCAGGAAGCTGCGGGTAATCTTCAGGTTCCGGGGCAA GGTACTGCGATTAACATAACGGATTCGTCTGTGGGTAAGAGTAAAGGATGCTGTTTTACCTAGTTAACCCTCAATGACTTATATCA ATCAGTCACACGTTTGATTTTTTACCAATTTTTTTTTGGTTTTTGGCTTGATTTCAGCAATTATAGCATTACCTTTTTGCTTCCCA GTTTATTTTATTTTTTGGATTTATGTTACAGATTGCTGTATTGAAACTGTGATCATTCCACAGTATTTTTCAGAAAGGAAGATCTT TGTTTTTTTATTGCTATCTAAAATGTCTTATGCAGACACATATTCACAGATGAAGAAGCTCTCTGCCTGTCTGATTCGACGTGCAG TGTTAGTACATAGAAACGTTGAAAAGGATATTTACTCCTTCTCTTGGCTAGCTTTGATGGGAGAAAAGTCTCTTGAACATTTCAAA ATGTACAGACAACAAAAGG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172221 RAB GTPase homolog A2B [Arabidopsis thaliana]	1016	5e-108
ABW81091 Gtpbnd1 [Cleome spinosa]	998	6e-106
XP_002329949 predicted protein [Populus trichocarpa]	966	3e-102
XP_002307838 predicted protein [Populus trichocarpa]	964	5e-102
Q40193 RecName: Full=Ras-related protein Rab11C	962	8e-102

Swiss-Prot top hits (Blast detail)	Score	e value
Q40193 Ras-related protein Rab11C	962	4e-103
Q96283 Ras-related protein RABA2c	953	4e-102
Q39434 Ras-related protein Rab2BV	953	4e-102
Q40523 Ras-related protein Rab11A	922	2e-098
Q40723 Ras-related protein RGP2	815	4e-086

TrEMBL top hits (Blast detail)	Score	e value
B2BXQ4 Gtpbnd1	998	4e-106
B9N3X5 Predicted protein	966	2e-102
B9HBS5 Predicted protein	964	3e-102
B9S3C5 Putative uncharacterized protein	956	3e-101
C6TMZ9 Putative uncharacterized protein	947	3e-100

Arabidopsis top hits (Blast detail)	Score	e value
AT1G07410.1 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding	1016	2e-110
AT3G46830.1 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding	953	4e-103
AT5G59150.1 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding	944	4e-102
AT1G09630.1 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding	809	2e-086
AT4G18800.1 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding	747	3e-079

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			67%


10	1			33%

Unigene Members	Member information