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Information for unigene UN19234

FASTA Sequence
Unigene ID: UN19234Length: 1253 SSR 
TTTTTTTCTTTTTCTTTTTTTGCTTTCCTCTTCCTCTCGACTCGGCGACAAGAAAAATAAAAAAGTACCGAGGCCTTAGAGAGCTG
GTAGAAGATCGAAGACTCATTCTCCGAGAATTCTTAAGCTGAGTTGTAAAAAATGGCATGTAGAGGTTGTTTGGAGTGTTTGCTGA
AGTTACTAAACTTTATTCTGGCGGTTGCTGGACTTGGCATGATTGGTTATGGTATCTACTTGTTTGTCGAGTTCAAGAGAGCATCC
GACAACTCTCTTAACTTCAGTGCCGACGACCACCAGAGTTACGTCTCTTTTGGGAGGCCCATGCTTATGTCTCTTTCTCTCTCTTC
CAATGTCTTTGACAATCTCCCCAAAGCTTGGTTCATCTACTTGTTTATTGGTATCGGCGTGGCTCTGTTTGTTATTTCATGCTGCG
GCTGTGTTGGTACTTGTTCAAGGAACGTCTGCTGCTTATCTTGTTACTCTCTGCTTCTCATCTTGTTGATCTTGGCGGAGCTTGGA
GCTGCTGCGTTTATATTCTTCGACAACAGCTGGAGAGATGAAATTCCTTCTGACAGGACTAGAAATTTCGATACCATCTATAATTT
CCTCAGAGAAAACTGGAACATCGTAAGATGGGTAGCTCTAGGAGCCGTTGTTTTCGAGGCTTTGCTTTTCTTGCTTGCCGTTATGG
TTAGGGCAGCTAATACACCAGCGGAGTATGACAGTGATGATGAGTTTATTACTCCTCCAAGGCAACAGATCAGCAGCCATCCATCA
ACCGCCAGCCCGCCCTGTCACCGGTGTCCCAGTCGCTCCTACTTTGGACCACGCCCGAGCCGCAGTGACCCTGGAGTGCACGTATG
AGGAGAAGTATGGGCTTGACACATCTGAGTTCACATACAATCCCTCAGAGTCGCACCGGTTCCAGCAAATGCCGCAACCAAATGAA
GAAAAGGGTCGATGCACCATCATGTAAGTCCATGCTAAAAAAGAGAGAGAGAGAGAGAGAGAGAGTTCAGTCAGTTCTCTTTTCCT
GTTATCTTGTCTTCGTGTGTAACAATCAAGAGAGTCAGTGAAAGTAGAGGGTTGTTTCTAGGTTGATGATGATGACCACTCTCTTA
GAATTGGAGATCTCTCTAATCAACCTAGTCACGTTTTATGAAAACTCTTCTTTTTTGTTGTGTCTTTGTAGTCGTATTGGTTGTTT
GATTCGGTCCTATAAATTCTTATTATATATAAAATTCATCTGTTTTGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34310 unnamed protein product [Thellungiella halophila]9791e-103
NP_564399 tobamovirus multiplication 2A protein [Arabidopsis thaliana]9762e-103
XP_002893721 hypothetical protein ARALYDRAFT_473428 [Arabidopsis lyrata subsp. lyrata]9565e-101
ACU21254 unknown [Glycine max]7801e-080
ABK92751 unknown [Populus trichocarpa]7755e-080

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5W7 At1g32400/F5D14_229762e-103
C6THF2 Putative uncharacterized protein7808e-081
A9P8P8 Putative uncharacterized protein7753e-080
C6TMZ7 Putative uncharacterized protein7655e-079
B9SNR7 Putative uncharacterized protein7646e-079

Arabidopsis top hits (Blast detail)Scoree value
AT1G32400.1 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding9769e-106
AT1G32400.2 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding9769e-106
AT1G32400.3 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding9769e-106
AT4G28770.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2421e-020
AT2G20740.2 unknown protein2331e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
116  100%

Unigene MembersMember information