RadishBase

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Information for unigene UN19246

FASTA Sequence

Unigene ID: UN19246	Length: 1803	SSR
TCTTCTTTCCTTCTCTGATCTTTACTTCTCCGACAGATTCAATGAAGCTGTAAGAGAACCCTAGAGATTAGAAAAAAATAATTCAA AATTTATCTTAGGAGCTGGAGACCTGAAGTTTGGTGTCTGTCTGATCTGTCTGAGAGAAAGAAAGGACGTGTCTTTTCATCCTTGT CTCAAATCCTAGCTGGACTTCCACATCGCTCATTAAAAAACGATGGGAACGAGCGAAGAAAAGACGCCGTTTAAGCCTACTTCCAA ACCAGCATCTTCGGCACAGGACGTTCCTCCCACACCGTATTCAGACTGGTCAAACTCGATGCAGTATGCTTGTTTCTTTAGGCTTA TTATGGCGGAGGAGGTACTCCAAGTCCTTTTTTCCCTTCCCCAGTTGGATCTCCTAGTCCTCACCCTTATATGTGGGGTGCTCAAC ATATGATGCCGCCTTATGGGACCCCAGTTCCGTATCCAGCAATGTATCCCCCAGGGACAGTCTATGCCCATCCTGCCATGCCCATG CCTCCGGCTTCTGGTCCAACCAACACGGAGACGGTGAAAGATCAACCCTCTGGCAAGAAGTCAAAGGGGAGCTTGAAAAGAAAGGG CGAGAAGGCGCCTTCTGGTTCAGGGAACGATGCTGTATCTCAAAGTGACGAAAGTGTCACAGCTGGTTCATCTGATGAAAATGCCA ACCACCAGGAACAAGGTTCAGTTAGGAAGCCAAGCTTCGGACAGATGCTGGCTGATGCAAGTTCTCAGAGTAATACTACTGGTGAG ATCCAAGGTTCCATGCCCATGAAGCCAGTGGTCCCGGTGACTAATCTGAATATGGGGATGGACTTATGGTCTTCCCAGGCTGGCGT AGCTGTGAAGGATGAAAGAGAGCTCAAGAGGCAGAAAAGGAAACAATCTAACCGTGAATCCGCTAGGCGGTCCAGATTGCGCAAGC AGGCGGAATGCGAGCAGCTTCAACAGAGAGTAGAGAGTTTGACGAGTGAGAATCAAACCCTGAGAGATGAGTTACAGAGACTATCC GGAGAATGTGAGAAGCTCAAGACTGAGAACAACTCTATTCAGGATGAGTTGGTGAGAGTGCATGGGCCAGAGGCCGTAGCTAATCT AGAGCAGGATGCTGCTGGGTCTAAAGATGCTGAATGAAGAACACATTAACACTTAGGGGAAAAACATGGAGCTTTATAACCGTATT GTTGGGATAAAAAAACTTATTTGAGATTTACGTGACCAAAATACAATCGTTTTGACATTTTCATTGTAATAGTGATTCAAACATAA GGCTGTAAAAAGCTGCAAAGCTATGATGACTACACTTGTTTGGTTGTTTTACTAGTCTTCATGATCAGATTCTGAATCTTGGATTG TTGCCGTTGATAGTTCTAGTTCTGGTTCGGGATTACTGTCTGGGATCTCTTCTCCTTGTTGTTGGCTTGGTGGTGTAACTTCACTG GCTGTTGGAACAACAAGCAGAGTGACATTCTATTCAATAACAAAGTAGTAGTAGTAGTAGTTATTTCAGGACAAAACATTTTAAGA GTTTGGAAGTTAACCTGATCCCAAGATTCTGACGATCATTGATCGCACAAACTGTATTTCTCCTTGGTGTGACCTAACGACCTTGA CCTGCACATGTTGTGTGTGTGTTTATAAGGCATTTGTGAAGCAACTCAAGAATGCATAGTTGTCTGTGCTCTGAAGAAAGCAAACA ATGTACCATCTCCCCGTAGACGCCATCAACAAGTTGATCCAGTCTAGCTTGGTGCTGTATCAGGAAAGGGCGAAGGTGGTTGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAA58774 G-box binding factor 1A [Brassica napus]	1244	3e-134
CAA58773 G-box binding factor 1B [Brassica napus]	1223	9e-132
NP_195391 G-box binding factor 1 [Arabidopsis thaliana]	1194	2e-128
AAK96765 Unknown protein [Arabidopsis thaliana]	1191	4e-128
CAA45356 G-box binding factor 1 [Arabidopsis thaliana]	1190	6e-128

Swiss-Prot top hits (Blast detail)	Score	e value
P42774 G-box-binding factor 1	1194	8e-130
Q99091 Light-inducible protein CPRF3	269	1e-022
P23922 Transcription factor HBP-1a	262	1e-021
Q99142 Transcriptional activator TAF-1 (Fragment)	245	9e-020
P42775 G-box-binding factor 2	244	1e-019

TrEMBL top hits (Blast detail)	Score	e value
Q39333 G-box binding factor 1A	1244	2e-134
Q39334 G-box binding factor 1B (Fragment)	1223	6e-132
Q5K1L6 Z-box binding factor 2 protein	1194	1e-128
Q9ARI7 G-box binding factor bZIP transcription factor (Fragment)	365	2e-032
A4ZGT2 Transcription factor bZIP116 (Fragment)	358	1e-031

Arabidopsis top hits (Blast detail)	Score	e value
AT4G36730.1 GBF1; sequence-specific DNA binding / transcription factor	1194	7e-131
AT4G36730.2 GBF1; sequence-specific DNA binding / transcription factor	1181	2e-129
AT2G35530.1 bZIP transcription factor family protein	249	3e-021
AT4G01120.1 GBF2 (G-BOX BINDING FACTOR 2); DNA binding / sequence-specific DNA binding / transcription factor	244	1e-020
AT1G32150.1 bZIP transcription factor family protein	234	1e-019

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	2			29%


8	2			29%


11	1			14%


12	1			14%


6	1			14%

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