 |
Information for unigene UN19265
| FASTA Sequence |
| Unigene ID: UN19265 | Length: 2884 |
SSR | | GTATTGGTAACGGGGTTTTGTCTCCAGCTATTCCAGTTCTGTCTTCCATGTCAGGTTTGCAAGCTACAGAGAAGAAATGGACTGAC
GGCCAACTTCTGCTTCTTACCTGTGTCATACTAGTTGGATTGTTTGCTTTCCAACACTCTGGTACTCACAGGGTGGCTTTTATGTT
TTCACCCATTGTCATCATCTGGCTTATTTCACTCCTCTCCCTCGGTTTTTATAACATCATACACTGGAATCCCAAGATCATCTATG
CAATTTCCCCGCTTTATATCATCAAGTTTTTCAGAGTCACTGGTCAAGATGGCTGGATTTCTCTTGGAGGGATTCTTCTTTCTGTA
ACTGGTACTGAAGCTATGTTTTCAAATCTTGGCCATTTCACCTCTGTCTCAATCAGACTTGCTTTCGCCTTCCTTGTGTACCCATG
TCTGGTTGTACAATACATGGGCCAGGCAGCTTTCTTATCAAAGAACCTCGGGTCTATTCCCAACAGTTTTTACAGTTCAGTCCCAG
ATCCTGTTTTCTGGCCTGTGTTTGTTATTGCTGCACTTGCAGCCATTGTTGGCAGTCAGGCTGCGATAACCTCCACATTTTCAATA
ATCAAACAATGCCATGCTCTTGGATGCTTCCCACGCGTCAAATTAGTCCATACTTCAAAACATGGACACATGTATATCCCGGAGAT
CAACTGGATCCTCATGATCCTGACTCTTGCAGTAACTATAGGCTTCCGGGACACAATTTTTATTGGAAATGCCTACGGACTCGCCT
TCATGATAGTAACGTTCATCACAACGTTTCTCATGGCTCTTGTCATGGTCTTGGTATGGGAGAAGAGTTGTTTTCTGGGGGCTTTG
TTCCTTGGAAGTCTATGGATAGTCGAAGGTGCCTATCTCTCAGCGGCGCTCATGAAACTTCCACAGGGTGGTTGGGTGCCTTTGGT
GCTGGCTTGCATATCAATGACCGCTATGTATGTGTGGCACTATGGTACTCGAAGGAAATACAGCTTTGATCTCCATAACAAAGTTT
CACTGAAGTGGTTGCTGGGACTAGGACCTAGTCTTGGGATTGTCCGTGTGCCCGGAATAGGACTTGTATACTCAGAACTTGCAACA
GGAGTTCCTGCAATTTTCTCACATTTTGTGACCAACATCCCGGCATTCCATAAAGTTGTGGTGTTTGTTTGTGTGAAATCAGTTCC
AGTGCCTCATGTATATCCTGAAGACGCTTCCTCGTTGGGCGTGTATGCCCAAAGCCTTATCGTATGTACAGTGCATAGTGAGGTAT
GGTACAAAGACATTCGACGGGAGGACGGGGACTTTGAGAATCAGTTGATACAGAGCATAGCGGAGTTCATCCAGATGGAAGCAGGG
GACCTCCAATCTTCGGCTTCTGAGTCCCACCAATCATATGATGGGAGAATGGCGGTGTTAAGTAGCGACAAGAGTCTGTCAAACTC
AATCCTGACGGTTTCAGAGGTAGAGGAGAATGATGAGACGGGGAGACAAAGCAGCAAATCGATGACCTTGCAGAGTTTGAGGTCAG
TGTACGAGGAAGAGTATCAGGAGGGGCAAGTGAGGAGAAGGAGGGTGAAGTTTGGGTTAACGGAGGCAAGTAGTCGTGGGATGGAG
GCGTCTGTGAGGGAAGAGCTAATGGATTTGATAGGGGCGAAAGAGGCAGGGGTTGCATATGTAATGGGACATTCGTATGTGAAAGC
AAGGAAATCATCGACGTGGGTGAAGAAGATGATAATAGATATAGGGTACTCGTTTCTGAGTAAGAACTGCAGAGGGCCAGCGGTAG
CACTCAACATACCTCACATTAGCCTCGTTGAAGTTGGCATGGTTTACTATGTTTGATGAGCCAAAAAAGAAGAAGAAGAAGAAGAA
GATCCTATTATGTGTCCTAGTGTAGCATCTTCACCGATGATGCAACATGGTGGGTGTATGCTTATTGTTGTTATATGTATACTCCT
TATTATGGGTCACACACACACCGCACTATTTGTATTTGTATTTTGTTATGAATATTGTGTGATGTCTATTATGGAATGTTCTAGAT
TTACTTGTTCCCTACTCCAAGTTACTTGTTCCCTACTCCAAGTTATTAGACTTGGTCTACAAGCTATGTAATCCTATATAAGGAAC
TCATTACTCATGGAATAAGATATCTCATTCTTTCACAAACAAAGCATCCGATCTCTCTCTCTCTCTCTTTGGTTCGATTAGTTCTT
AAGCAAGAACACTAGGATTAGAACAAAATCTATATATTTTTGTTTTCCCCCTTTTAATTTACTGTTAATTTCATTAATTTTTAGAA
ATGTTTTTTGTGGCGACCGAAATTTATTTTTATAAAATTTATTTGTTATTATAGCTATTAACTAAGTTGCTTAATAACGCATTAAA
CTTTTATCATGTTACATTTAGAGGAGTTAGCAACTGATTCATGCAGTTTCCACAATGCGTTTCTGATAGTGCTCGATTAACATAAT
TACATTCTTTTTTTCCTGACAAACATTATGTGATAGAATTAAGCCTAACAACTTTAAAATTGTTTAAACATGCAACAAATATGTGA
TAGGATTATGAATATAGATTAGAAATTTGTGGTTTTACTTATTCATTATGATAATATTCAAAACAGAAAATATTGAAAGAAGAGCC
ACCTACGTATCATGAAGCAGAGAGAGAGAGAAAGTCTTAAGGAGAAAGAAGCAGAGCATCTCTTTCTCTGTCTATGTACTCAATAA
ACCCAACACAACTCTGTCAAAAAGCTTCACACTCTATTTCTCCTTCCCCACCTCTTTGCTCCCTCTCTCTCTCTCTTCTTTCCCCA
TAAAAGGAAACTCACTCCCTCAGAAACTTCCATCATTCAACACACT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884247 hypothetical protein ARALYDRAFT_477306 [Arabidopsis lyrata subsp. lyrata] | 2606 | 6e-292 |
| NP_186854 Potassium transporter 4 [Arabidopsis thaliana] | 2580 | 7e-289 |
| AAF19432 potassium transporter KUP3p [Arabidopsis thaliana] | 2541 | 2e-284 |
| XP_002512807 Potassium transporter, putative [Ricinus communis] | 2261 | 6e-252 |
| XP_002320426 predicted protein [Populus trichocarpa] | 2246 | 4e-250 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LD18 Potassium transporter 4 | 2580 | 3e-290 |
| Q8H3P9 Potassium transporter 7 | 1938 | 8e-216 |
| Q942X8 Probable potassium transporter 2 | 1916 | 3e-213 |
| Q5ZC87 Probable potassium transporter 3 | 1823 | 2e-202 |
| Q9FE38 Potassium transporter 3 | 1628 | 7e-180 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RGU8 Potassium transporter, putative | 2261 | 4e-252 |
| B9IA73 Predicted protein | 2246 | 2e-250 |
| B9GNF7 Predicted protein | 2215 | 9e-247 |
| Q8VXQ3 Putative potassium transporter | 1963 | 2e-217 |
| Q1T721 Potassium transporter | 1962 | 2e-217 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G02050.1 KUP3 (K+ UPTAKE TRANSPORTER 3); potassium ion transmembrane transporter | 2581 | 2e-291 |
| AT4G23640.1 TRH1 (TINY ROOT HAIR 1); potassium ion transmembrane transporter | 1629 | 4e-181 |
| AT1G70300.1 KUP6; potassium ion transmembrane transporter | 1523 | 9e-169 |
| AT2G40540.1 KT2 (POTASSIUM TRANSPORTER 2); potassium ion transmembrane transporter | 1494 | 2e-165 |
| AT5G14880.1 potassium transporter, putative | 1494 | 2e-165 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
