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Information for unigene UN19266

FASTA Sequence
Unigene ID: UN19266Length: 738  SNP
TTTTGCAGTAAGAAAAAAAAAGCAAGATAAATAAAATAAAAATACTGCTCTAGCTTTTGGAATATATTCCTGTTTTAATCTCATCA
AAAACCTATAAAATGGCACGTCAATTTGTCATATTGGCCCTATTGGCTTTGACCGTGGCCACCGTTTTCGCTGCAGACGCTCCCTC
AGCCTCTCCCAAAAAATCTCCATCACCAACCACTGCCCCAACCAAGGCTCCCGCCGCCCCAACCAAAGCTCCGGCCGCTGCACCTA
AGTCAACCTCAGCCTCTTCTCCTAAAGCATCTTCCCCTGCTGCGGAAGGACCTGCTGCTGAAGGACCTGCTGCCGAAGATGACTAC
TCCGCGGCTGGCCCCAGTGATGCTGGTGTGGCGCCCGACGTCTCCTCTCCACCGGCTCCTACACCCGATAGCACATCAGCAGATGG
ACCAAGTGAGGCAGAGGCACCAAGTAGCAGCGCCGTGGCCACCGTCAGGCTCTCTGTTGCCGGCACTATCATCACCGCCGTCAGCT
TCCTCTTCTTTTCTCTCTAAGTTTAAAGCAGTCCACATTTTGCCAGACAATTATTTTTTGAGATGAGCTCGTAAATGTATCTTATA
ATATACGTTTATAAATCGAGGTTAACTGGAGTTAATATAAACTCGAGTATCAATATGAAATTTTGTTTAACTCAAATGTTACGGAA
AGGCGTATGATTTTTGTGCCCTGGTGGTCTTCTCTCGCTTAACTATATAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002873662 hypothetical protein ARALYDRAFT_488278 [Arabidopsis lyrata subsp. lyrata]4921e-047
NP_196942 arabinogalactan protein 6 [Arabidopsis thaliana]4902e-047
CAB42531 AGP6 protein [Arabidopsis thaliana]4866e-047
XP_002884264 hypothetical protein ARALYDRAFT_477345 [Arabidopsis lyrata subsp. lyrata]3495e-031
AAC37509 arabinogalactan protein [Brassica napus]3478e-031

Swiss-Prot top hits (Blast detail)Scoree value
Q9LY91 Classical arabinogalactan protein 64901e-048
Q9FVE0 Classical arabinogalactan protein 112991e-026
Q9FPQ6 Vegetative cell wall protein gp11494e-009
A0JUU0 Translation initiation factor IF-21494e-009
Q80TM9 Nischarin1441e-008

TrEMBL top hits (Blast detail)Scoree value
Q39318 Arabinogalactan protein3476e-031
Q39319 Arabinogalactan protein3386e-030
A5A157 Putative arabinogalactan protein3378e-030
Q4FX62 Proteophosphoglycan 51702e-010
Q4FX61 Proteophosphoglycan ppg11683e-010

Arabidopsis top hits (Blast detail)Scoree value
AT5G14380.1 AGP6 (Arabinogalactan proteins 6)4917e-050
AT3G01700.1 AGP113001e-027
AT3G27416.1 unknown protein2068e-017
AT4G37450.1 AGP18 (ARABINOGALACTAN PROTEIN 18)1682e-012
AT5G53870.1 plastocyanin-like domain-containing protein1404e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  29%
 
92  29%
 
82  29%
 
71  14%

Unigene MembersMember information