RadishBase

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Information for unigene UN19296

FASTA Sequence

Unigene ID: UN19296	Length: 1588	SSR
CACATCTAAGGTTTGGGGAGTTCAACTCTCAGAACGTTGCTAATATTGCAGGCGCTTTTGCTTCCATGAGGCATTCTGCTCGAGAA CTCTTTGCTGAGCTGTCAGAGAGAGCAGCTGCTATTATCGTCACCTTCAAAGGCCAAGAGATTGCTCAACTGTTGTGGTCATTCGC CTCGCTTTATGAGCCAGCTGGTCCTTTGGCTGAGTCTTTGGACAGTGCTTTCAAAGGCAGTGACCAGTTTAAGTGCTGCTTGACGA AAGAAACATCAAACTATGATGAAGCAGCAGACGCTGATGGAAGCGATGGTGCTTCAGGATCTCCAGCGCTTAGCTTTAACAGGGAC CAGCTTGGAAACATAGCATGGTCCTATGCTGTTCTTGGGCAACTGGAGCGATCTTTCTTTGCAAATATATGGAATATCTTAACCAC CTTGGAAGAGCAGAGGCTTGCTGAACAGTATAGGGAAGATGTCATGTTTGCTTCTCGGGTGTATCTCGTGAATCAGTGCTTGAAGC TCGAGTATCCCCACCTTGAGTTGTCACTATGTCATGAGCTCGAAGAAAAAATTACCCGTGCAGGAAAAACCAAAAGGTTCAATCAG AAAATAACCTCATCGTTTCAGAAAGAAGTTGGACGCCTTCTGATAAGTACAGGGCTTGATTGGGCTAAAGAACATGATGTGGATGG CTACACTGTGGATGTTGCTCTGGTCGAGATGAAAGTCGCTTTAGAAATCGACGGGCCAACTCATTTCTCAAGAAACACAGGACTAC CATTAGGGCATACAATGCTGAAGCGGCGATATGTTACTGCTGCTGGATGGAAGGTGGTATCCTTGTCTCTTCAAGAGTGGGAAGAA CATGAAGGAAGTCATGAACAGCTAGATTATCTGAGGGAGATTCTCAACGGCTGCTTATAGAGAAGGCATTAATACGTAAGACATTG GTTGTTTATAGAAAAGGCTAAGCTTATTGTATCTGTTTGATGACTTAAGAAAACATAATTAAAACCATTTAAATCATACATCTTGA TCACAAGCTTCTGCCAAGTAAACACTGTTGTGTTCCTAGTTATTTCTCAAACAGGGAATATAGAATACACATTTAGAAGCAAACAA TACATCATAGAGAGAGAGAGAGACTAGCTCTTGATCTGGGACAACATAGTCCTGACATCTTTGCTGTTCGGCCTCTGTTTCGGATC ATCCAAAGTGCAGTAACAAGCGATTTTCAAAACCAAAAGCATCTGCTCATCGAATCCTTGCTCCATCAGCTTCGGATCAATAGCAA GGCTTGGATTCTCCGATGTTACCTTGTTCCTCATCCACTTTATCAGACTCATCTCTTCAGTAGTCTGGAAAAACTCATCTGAAGGA AGCTTCCCAATCACAAGAACCCCAAGAATCACTCCAAAACTATAGATATCACATTTATCAGTGAACTTGAGAGTTTGATGATACTC TGATGCTATGTATCCCACAGTGCCTGCAAGTTTCGAGGCTGTAATGTGGGTGACTGCATCAGGCATCACCTTGCAGCTATACCTAC AGCAATCTTGTGCCTTGCTGGCCACATTAAATCTCTGTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_850176 protein RAP [Arabidopsis thaliana]	1375	2e-149
AAD32283 hypothetical protein [Arabidopsis thaliana]	1375	2e-149
XP_002881203 hypothetical protein ARALYDRAFT_902227 [Arabidopsis lyrata subsp. lyrata]	1372	4e-149
XP_002276208 PREDICTED: hypothetical protein [Vitis vinifera]	1118	1e-119
XP_002533346 conserved hypothetical protein [Ricinus communis]	1095	5e-117

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LYN8 Leucine-rich repeat receptor protein kinase EXS	204	4e-015
Q9LJF3 Receptor-like protein kinase BRI1-like 3	200	1e-014
C0LGK9 Probable LRR receptor-like serine/threonine-protein kinase At2g24230	199	2e-014
Q9LJM4 Receptor-like protein kinase HAIKU2	196	4e-014
O49318 Probable leucine-rich repeat receptor-like protein kinase At2g33170	195	5e-014

TrEMBL top hits (Blast detail)	Score	e value
Q8VZE7 At2g31890/F20M17.7	1375	1e-149
Q9SKB1 Putative uncharacterized protein At2g31890	1375	1e-149
B9T527 Putative uncharacterized protein	1095	3e-117
B9N8M4 Predicted protein	1088	2e-116
A5B1L8 Putative uncharacterized protein	1044	3e-111

Arabidopsis top hits (Blast detail)	Score	e value
AT2G31890.1 RAP	1376	5e-152
AT2G31880.1 leucine-rich repeat transmembrane protein kinase, putative	604	2e-062
AT1G08590.1 CLAVATA1 receptor kinase (CLV1)	228	6e-019
AT1G17230.1 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	209	1e-016
AT5G07280.1 EMS1 (EXCESS MICROSPOROCYTES1); kinase/ transmembrane receptor protein kinase	204	4e-016

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	5			83%


7	1			17%

Unigene Members	Member information