RadishBase

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Information for unigene UN19299

FASTA Sequence

Unigene ID:UN19299

Length: 1592

GATTAGACCTTCGCGTCACTCATCTCCCTCGACGATCTCCCAACTCCTCTTTCTCTCTGTTCATTTGATCTCTCTCTCTGTACGAG
ACTTTCGGAATCGAACCATGGATGAAGAGTACGAGGTCATTGTTCTCGGAACCGGTCTCAAGGAGTGCATCCTCAGCGGTCTCCTC
TCCGTCGATGGTGTCAAGGTGCTTCACATGGACAGAAACGATTACTACGGTGGAGAATCAACTTCGCTTAATCTCAATCAGCTTTG
GAAGAAGTTCAGGGGAGAAGAGAAGGCTCCTGAACATTTAGGTGCTAGCAGGGATTACAATGTTGACATGATGCCTAAGTTTATGA
TGGGAAATGGCAAGCTTGTTCGTACCCTTATTCACACTGACGTTACAAAGTATTTGTCCTTTAAAGCCGTTGATGGAAGCTATGTT
TTCGTTAAAGGCAAGGTTCAAAAGGTGCCAGTTACTCCTATGGAGGCCCTGAAATCTCCTCTCATGGGTATATTTGAGAAACGTCG
AGCTGGCAAGTTTTTCAGTTATGTTCAGGATTACGACGAGAAGGATCCCAAAACACACAACGGCATGGATTTGACCAAACTTACAA
CTAAGGAACTGATTGCGAAATTTGGTCTTGATGACAACACCATTGACTTTATTGGTCACGCAGTGGCACTTCACACTAATGACCAA
CACCTCAATCAACCCGCCTTGGATACCGTTATGAGAATGAAGCTCTATGCTGAATCTCTTGCACGTTTCCAAGGAACCTCTCCATA
TATTTATCCTCTCTATGGGCTGGGCGAACTACCTCAGGCATTTGCACGACTGAGTGCTGTATATGGTGGCACATATATGCTGTGCA
AACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGGTAAGGTTATTGGTGTAACATCTGAGGGAGAGACTGCCAAATGCAAAAAGATT
GTGTGTGACCCTTCCTACCTTCCGAACAAGGTTAGGAAGATTGGTAGAGTTGCTCGGGCCATCGCAATTATGAGCCACCCTATTCC
AAACACCAATGACTCTCACTCGGTGCAGGTCATCATACCTCAGAAGCAGTTGGGCCGCAAATCAGACATGTATGTCTTCTGCTGTT
CCTACTCCCACAACGTTGCTCCCAAGGGAAAGTTCATCGCATTTGTATCTACAGATGCAGAGACTGATAACCCTCAGACCGAACTA
AAGGCTGGAATTGATCTCTTGGGTCCTGTTGATGAGATATTCTTTGACATGTATGATAGATACGAGCCTGTCAACGAGCCAGCTTT
GGACAACTGCTTTATATCAACGAGCTATGATGCTACAACACACTTCGAGACAACTGTTTCTGATGTGTTGAACATGTATACCCTAA
TCACTGGAAAGCAACTGGACCTAAGTGTTGATCTGAGTGCAGCAAGCGCTGCAGAGGAATGAGGGTGTATCTCTTTCTCTAGTTGC
TTTTTTTCCTACTCTTGCTTCTGTTCTTTTTGTTTGGGTTTAAACTTTAAAGACAAAATCAGACCGATGCTCGTGTTTAGCAAACT
GATGTTGAATTCTCGGTTAAGGCTTATAAAAACTCTTCAAACCC

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
NP_191551 RAB GDP dissociation inhibitor 2 [Arabidopsis thaliana]	2231	1e-248
XP_002876528 ATGDI2 [Arabidopsis lyrata subsp. lyrata]	2230	1e-248
BAF81523 GDP dissociation inhibitor [Brassica rapa]	2167	3e-241
XP_002880083 ATGDI1 [Arabidopsis lyrata subsp. lyrata]	2154	8e-240
NP_181938 guanosine nucleotide diphosphate dissociation inhibitor 1 [Arabidopsis thaliana]	2148	4e-239

Swiss-Prot top hits (Blast detail)	Score	E value
P21856 Rab GDP dissociation inhibitor alpha	1300	4e-142
P31150 Rab GDP dissociation inhibitor alpha	1300	4e-142
P60028 Rab GDP dissociation inhibitor alpha	1300	4e-142
Q8HXX7 Rab GDP dissociation inhibitor alpha	1299	5e-142
Q7YQM0 Rab GDP dissociation inhibitor alpha	1299	5e-142

TrEMBL top hits (Blast detail)	Score	E value
O24653 AtGDI2	2231	6e-249
A8CF56 GDP dissociation inhibitor	2167	2e-241
Q96254 At2g44100/F6E13.23	2148	3e-239
Q96284 GDP-associated inhibitor	2143	1e-238
Q8LBY8 GDP dissociation inhibitor	2137	5e-238

Arabidopsis top hits (Blast detail)	Score	E value
AT3G59920.1 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor	2232	3e-251
AT2G44100.1 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor	2148	1e-241
AT2G44100.2 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor	2083	5e-234
AT5G09550.1 RAB GDP-dissociation inhibitor	1869	3e-209
AT3G06540.1 GDP dissociation inhibitor family protein / Rab GTPase activator family protein	129	2e-007

EST library breakdown for ESTs in the assembly


21	3			12%


20	3			12%


6	6			24%


12	5			20%


7	3			12%


18	1			4%


10	4			16%

Unigene Members