RadishBase

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Information for unigene UN19318

FASTA Sequence

Unigene ID: UN19318	Length: 1249	SSR
CGTGAAAAAACTTCTCCAAATATGCATTGTAATATCCATTCATAAGTCTTATTTTCTGAAAAAAAATCTCATGTTATGAACAGTAC ATGGATATCTTCAATTCTGAAACACTGATATAAGAACACTATAAAGAGTGCGAAACCTGATGAGAACCCAAAAAAAAAAATCAATG CTCGTCTTCATCACTGCCATAGTTCTGGAACAAAGATGCCAACCCGGCGTTAGCCACAACGTCACTCTTCTTCTCCTCTGGTTTTG CAGGAGCTGGAGTCGTAAAAGTTGTTGGTTGAGTTTGCTTCTTGATGACTGTTATGTGAATGGATTTGAAGGGTTGCTTGCTGGTA GCTTGCTTCTTGGGCTGCTTCGGGTTATCTGCAGATGAATTAGTTAAAATATCTGTGGGGTTGCTTGGACTTTCTTCTGATGCCTT TCTCTTCTTTGAAAGATCTGAAGATGATCCTTCTTTCTTCTCCTTCTGAAAGCTGTCATCATCATCCTCATCATCATCATCATCTT CATCGTCTTCATCTACAATTCTCCTAACAACTTCTTTCTGTTTACCAAATATCGACTTAATAACTGCTTCATCCTCTTCTTCTATT CGTTTGACCTTCTCAGCGCCAGTTCTTTGCAAGGCCTCCAGCATCGCATCTACGCTCACAGTAGCGTGTCTAGACTTCATTGATTT CATTTCATCAAGAGTGGCTGTAATGTCCATTTCCCTTTTGGAATCCAAAGTTCGGTTCTCCAAAGACTTCATAGCGTCCCCCATCT CCTCCGCATCTCTTTTCTGTTGTTCCTTATCAACCTCCTCGTCTTCAGCACGCCAGGGTTCGTAATTACGACTTGCCCCAGATTCC ACAATATAATCAGAGTTCTGTGGATCCGTCTTCATTGTCAGCTCAGCAGAGCACTTGGTGCACTTGAAGTAGAATCTAAAGATTTG AATCCCCAGATATGTCTCGCCAATGACGTCCTCTTTACGGGAATTGAACTTGGTTCCCTTGTAGATATAGTTTCCGCAGGTACTGC ATCTGACGCTCATGGGAAGCATCATACGCACCTTGATCTGCTGGTTCTTCGGTCGCCTGAGCCGTGGAAGCTTCGACGGATCGAAG TCCGGCGGGTAGTACTTGTTAAGCACCTTTCGTTCTCCCTCCTCCTCTTCTCTTTCCTTCTTCTTCCTCCGAGCAAAATCGCAAGT AAAAATGAAAAAGGAAAATTCTCGTTTTGATTTTAATCTTTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_173156 uncharacterized protein [Arabidopsis thaliana]	1504	1e-164
XP_002890205 hypothetical protein ARALYDRAFT_471912 [Arabidopsis lyrata subsp. lyrata]	1492	3e-163
NP_001077550 uncharacterized protein [Arabidopsis thaliana]	1486	2e-162
ACU21483 unknown [Glycine max]	1111	5e-119
XP_002518796 Coiled-coil domain-containing protein, putative [Ricinus communis]	1072	2e-114

Swiss-Prot top hits (Blast detail)	Score	e value
Q54WR5 Coiled-coil domain-containing protein 94 homolog	599	5e-061
Q9BW85 Coiled-coil domain-containing protein 94	583	4e-059
Q9D6J3 Coiled-coil domain-containing protein 94	574	4e-058
Q9P7C5 Cell cycle control protein cwf16	479	4e-047
P28320 Protein CWC16	233	1e-018

TrEMBL top hits (Blast detail)	Score	e value
Q9SHH1 At1g17130	1504	9e-165
A8MR03 Uncharacterized protein At1g17130.2	1486	1e-162
C6TI31 Putative uncharacterized protein	1111	4e-119
B9RY29 Coiled-coil domain-containing protein, putative	1072	1e-114
A9PGF9 Putative uncharacterized protein	1062	2e-113

Arabidopsis top hits (Blast detail)	Score	e value
AT1G17130.1 cell cycle control protein-related	1504	5e-167
AT1G17130.2 cell cycle control protein-related	1486	6e-165
AT2G32050.1 cell cycle control protein-related	641	6e-067
AT3G43250.1 cell cycle control protein-related	440	1e-043
AT2G29430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT1G17130.1).	240	2e-020

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	4			100%

Unigene Members	Member information