RadishBase

| | | |

Information for unigene UN19323

FASTA Sequence

Unigene ID: UN19323	Length: 1413	SSR
GGAAATAAGAAAAACAAAAAAAAAGGAAAGCGGGGAGAAGAAGAAGAAGAGGATGAAGAAGGGTGGATTCAGCAATAATCTCAAGC TCTCAATCCCTCCAGCTGGCGAGCAATCCATCACCAAATTCTTGACGCAGAGCGGGACGTTCAAGGATGGAGATCTGCGAGTTAAC AAGGATGGAGTTCGTATCGTCTCTCAGTCTGAGCCTGAAGCTCTGTCTCCGATTAAGCCAGCGGATGATGAGTTGAGCTTGTCGGA TTTAGACATGGTTAAATTCATTGGTAAAGGAAGCAGTGGCGTTGTACAGCTTGTTCAACACAAGTGGACTGGTCAATTCTTCGCCT TGAAGGTCATTCAACTAAACGTTGATGAAGCGATTCGCAAGTCAATTGCACAAGAGCTGAAAATAAACCAGTCTTCACAATGTCCG TACCTTGTGACCTCATACCAATCCTTCTATGATAATGGCGCAATCTCCCTCATCTTGGAGTACATGGACGGTGGATCTCTAGAAGA CTTCCTCAAATCAGTCAAAACCATCCCTGAGTCCTATCTTTCTGCCATCTTTAAACAAGTGCTTCAGGGACTGATCTATCTTCATC ACGATAAGCACATCATCCACCGTGACTTGAAACCATCCAATCTGTTGATCAACCACAGAGGAGAGGTCAAGATCACTGACTTTGGT GTGAGTACCGTTATGACGAACACCGCTGGTTTAGCAAACACCTTTGTCGGGACTTACAACTATATGTCTCCAGAGAGAATCGTTGG GAACAAGTACGGTAACAAAAGCGATATATGGAGCTTGGGATTAGTAGTGCTTGAATGCGCAACAGGGAAGTTTCCTTATTTGCCAC CAGATGAAGAGGAAACATGGAGCAGTGTATTCGAGTTGATGGAAGCAATTGTGGACCAACCACCACCAACTCTTCCTTCAGACAGT TTCTCCCCTGAGTTATCTTCATTCATCTCCACTTGTTTGCAAAAGGATCCCAACAGTCGAAGCTCTGCAAGGGAACTAATGTAACA TCCTTTCGTGAAGAAGTACGACAACAACTCGGGGATCAATCTTGCGTCATACTTCACAAATGCAGGGTCTCCGCTTGCAACGCTTA AGAATCTCTCTGGTACATTCTCCGTTTAAGCTCTCCAGGTAGACATACAATATCGTCATCACCTGGTGGTTACTGTTATCATCTTC TTTGTTTTTAACTTCCGGTTAAAAAAAATAATCTGGATCATCTACAGTAGTAACTATAAATTTGTGCTGTATTTTCAAGATTATAG GATATATGAGCTACATGAGAGTGCTTATTCAGTTTTATCTTCTTTTTTTTCCACTTGGAGCTCTCATAAGCGATGAGATACTTTGG ATTGGAATGTTATGTGGAAAAAGAAGATTCATTATCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ADZ75456 mitogen-associated protein kinase kinase 1 [Brassica napus]	1828	4e-202
ABF55662 double MYC-tagged mitogen activated protein kinase kinase 2 [synthetic construct]	1720	1e-189
NP_194710 mitogen-activated protein kinase kinase 2 [Arabidopsis thaliana]	1716	4e-189
CAA07281 MAP2k beta [Arabidopsis thaliana]	1712	1e-188
NP_001031751 mitogen-activated protein kinase kinase 2 [Arabidopsis thaliana]	1596	3e-175

Swiss-Prot top hits (Blast detail)	Score	e value
Q9S7U9 Mitogen-activated protein kinase kinase 2	1716	2e-190
Q94A06 Mitogen-activated protein kinase kinase 1	1212	5e-132
Q5QN75 Mitogen-activated protein kinase kinase 1	1063	9e-115
Q9FJV0 Mitogen-activated protein kinase kinase 6	1041	3e-112
Q55CL6 Dual specificity mitogen-activated protein kinase kinase 1	564	7e-057

TrEMBL top hits (Blast detail)	Score	e value
B9DGL3 AT4G29810 protein	1589	2e-174
B3H757 Uncharacterized protein At4g29810.3	1452	1e-158
B9IKC3 Predicted protein	1393	8e-152
B9HDW7 Predicted protein	1334	6e-145
O48616 MAP kinase kinase	1330	2e-144

Arabidopsis top hits (Blast detail)	Score	e value
AT4G29810.1 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase	1720	5e-192
AT4G29810.2 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase	1600	4e-178
AT4G29810.3 ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2); MAP kinase kinase/ kinase	1452	6e-161
AT4G26070.2 MEK1 (MAP KINASE/ ERK KINASE 1); MAP kinase kinase/ kinase/ protein binding	1217	1e-133
AT4G26070.3 MEK1 (MAP KINASE/ ERK KINASE 1); MAP kinase kinase/ kinase/ protein binding	1217	1e-133

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			11%


12	1			11%


21	5			56%


7	2			22%

Unigene Members	Member information