 |
Information for unigene UN19328
| FASTA Sequence |
| Unigene ID: UN19328 | Length: 1711 |
SSR | | CCTGGTAACATGACAAATAAACTTAGGAAACTGAGAACAAAAATTCAAGTTTAAGGCAACCCCAAAATTTTGACAGAGACAGAAAG
ACAAGTAGAATTCAAATCCAGTATACAAGACCATCTAACTCCTGAAACCAACAACTGATCATTGGATCGCTTTGACATTTCCGATG
GCTTGTTTTAGTAACCAATGCCCGTAAGCAAGTCCAGGACTCACGGGGTTTTTTTGATGATAGTGACAAACCAACACCTTTTCAAG
AAGCTCCAGGGACAGCAGCCGCTGCAGTAGCATACATGTTTGAGTCCTGATTCGCATATCCGTTGTTGTAACCTTGTCCTCTTGAG
TATCCTCCGTTCCATTGGTGGCCAGAGTCATTTCTCCACTGTTTGTTTGGGCTTCTTCCCCAAGAAAGCCGGACAGTGTTCTTCCC
AATGACTGTCCCGTTCAAGTTCCCTATGGCTTCTTCAGCACTCTGCCTGTTACCAAATTGGACAAAACCGCATCCTTTTCCTACAG
GAATCTTGACCGAAACAACCTCCCCAAACTGGGAGAAAGGTTGCATGAGGTCTTCTTCAGTAACATCAGCGTCAAGACCTCCAACA
AATATCGTTGAGTTATTTGATTCCCCATCAGCCATAGAACCATTTCCTCCATGTCCACCAGCTAGTGTCAGAGCTTGTGAACCATT
TTGTTGGCCATAAGCAGCGGCTCTTTTAGGGGTTGCAACACCAACACGCATCTGCCTGCTCGAGCAGAAAGCGCCGTTCATTTCCG
TCAACGCCTTCGACCGCTCGCTCTCATCACCAAACCTGACAAACCCGTAGCCTTTTGAACGCCCGGTGTTGGAATCAATCAAAACT
TTTGCACCTTTGACAGATTGGTATGCAGCAAAGGTCTCCATCAGCAGAGTATCGGTCACATCAGGAGCCAAATCTCCTACGAATAA
AGATAGATCTGGACCGTTGTTTTCAGAAGCTCTCTTCTCGCCGGTACTGAAAGATGCCCAGTTCAAACGGAAGGGCTGCTCAGCGT
TGGGCATCGTTACGCCGCTATAGCTCTGAAGAACTTCCTCAGCTGCGGAACGTGTGAGGAACTCGACAAAACCGTACCCTTCTGAC
TGACTAGTTTGCTTGTTTCGTATCACTTTCACAGAGGAAACCTGGTTGGTGTGAGAGAAACAGGTGTGGAGATAAGTCTCGTCCAT
CCAATGAAGAAGATCACCAATCCAGAGAGTCTTCACATCGTCTCCACCACCAGATCCACCACCACGCTCCTGTTGTTGTTGCTGGT
GATAAGGAGGAGCGTATTGAAACTGAGGATGATAAGCAGCAGCAGCTTGGTTGTAAGGAGCGTATTGGTGAGGATGATACATCATC
ATCTGTCGCTGCTGCTGCATCATAGCCATAGCCGCCATCCATTGTTGATGTTGTTGCCACTGTTGTTTTTGTTGCGAGGGAGGAGG
TGGCGTTGTCCCGGCTAGTGTAGCCGCCGCCGCCGACGACGAATCTGGACCGTTGTTTGCCGTCTGCATCTTGCAAAATCCGATCC
GATCTGGAAACTCTCTCTCTCTCTCTCCTCTTTAGATAAAGGAGGAAGCTTGTTGGAGCTCTCTGTGTGTTAATGGAGGAAACGGG
TAGAAGGAGAGGGAGAGAGGATCAGATTTGGTCTTTCGAAGATAATGGAGGCGGAGAGAGAGAAGAGAGTGTGTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894197 hypothetical protein ARALYDRAFT_474095 [Arabidopsis lyrata subsp. lyrata] | 1890 | 4e-209 |
| NP_175383 RNA-binding protein 47A [Arabidopsis thaliana] | 1801 | 8e-199 |
| XP_002885294 RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata] | 1567 | 1e-171 |
| NP_188544 RNA-binding protein 47B [Arabidopsis thaliana] | 1559 | 9e-171 |
| AAM67293 nuclear acid binding protein, putative [Arabidopsis thaliana] | 1476 | 4e-161 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 551 | 3e-055 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 547 | 8e-055 |
| Q01085 Nucleolysin TIAR | 369 | 4e-034 |
| P52912 Nucleolysin TIA-1 | 350 | 6e-032 |
| P31483 Nucleolysin TIA-1 isoform p40 | 343 | 4e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WW84 At3g19130 | 1559 | 6e-171 |
| Q8LFI9 Nuclear acid binding protein, putative | 1476 | 3e-161 |
| Q9LJL7 DNA/RNA binding protein-like | 1427 | 1e-155 |
| B9HRX8 Predicted protein | 1346 | 3e-146 |
| B9RY32 Nuclear acid binding protein, putative | 1327 | 5e-144 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G49600.1 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding | 1802 | 2e-201 |
| AT3G19130.1 ATRBP47B (RNA-binding protein 47B); RNA binding | 1559 | 3e-173 |
| AT1G47490.1 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding | 1057 | 5e-115 |
| AT1G47500.1 ATRBP47C' (RNA-binding protein 47C'); RNA binding | 1044 | 2e-113 |
| AT4G27000.1 ATRBP45C; RNA binding | 886 | 3e-095 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
