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Information for unigene UN19329
| FASTA Sequence |
| Unigene ID: UN19329 | Length: 1156 |
SSR | | GGGGTGGTTATGAAGGAGGCAATGGAGGAGGAGGAGGAGGAAGCTCGTCTTTCTTCAGTTCCGTTACACGGAACCTATGGGGAAAC
AATGGTGGTCTGAACTATAACAACAATAATGGTGCAAACTCAAACTCCAATACATACATGGGAGGAACAGCAAGTGGGAACAACGC
GCTAAGCGGGCCATTTGGTAACTGGGGTGCTGCTCCTGGAGGAGGAGGAGGAGGAAACAATGGTGTTGGTAACGAGAATTTGAAGT
TTGGTTATGGAGGGAACGGTGAATCTGGTTTTGGGTTGGGAACAAGAAACATAGGGCCTAGCAAGGCAGCACCGTCTTCTTCATTC
TCTTCTGCCTCGGGGACTAACAACACGGGTTACGATGGAGCAGGACTTGCGGAGTTTTATGGGAATGGTGCAGTGTATAGTGATCC
CACTTGGAGATCATCAGCTCCTGAGACGGAAGGGCCTGGTTCTTTTAGCTATGGGATTGGAGGAGGAGGAGTAGGTCCTTCTTCGG
ATGTTTCAGCTAGAAGTTCATCTCCAGGTTATGTTGGCAGTTACAGTGTGAACAAGAGGCAACCAAACAGAGGCGAGCCATCACTG
TGAACGATTAGATGATATCTTCTCTCCTTGATACAAAAAGCCTATGAGGACGAAACTTGATCAACACCATCAGCTAGAGGCTAGAG
CTAACCAGAAAATCCCATAGATTTTCCTGTCAATGGTTTGGTTTTCTAAATTTATTGGTCCTCCTAGGCTTCTTTTCTGTTTTCTT
TTTTTTTTCTTTCAATGAGGGATAGTGGAAACTGTATCAGTCTCCGGCGAGGCTGTAATACATAAGAAGAGTTCAAAACAAAAACA
AAAATGAAGAAGAGGATGATCCTTCTTCCTGAGTTTTCTTTATTGTCATGTAATGGTTCTTCTTGGTCTTGAGGGTTGTGTCTAAG
GTTTGGTGTTTTGAGGCAGATTGTACTAGAGGTTATATGTTACTTTTGTTTTGTGTTTTTTTAAGTTTTTTGTTTTGTTTTTTGAT
AGTGAGAGATTATTGGAAAAAGGATTTTAGCCATTGTAGGGCTTTGGAGAATAAGTCTGTTTGTATGTCTTATGCGAACGCAAGCA
AACTCGTTTCTGTTCATGTACTTTTATCTTATAGAAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_850539 RNA recognition motif-containing protein [Arabidopsis thaliana] | 848 | 1e-088 |
| XP_002882552 hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp. lyrata] | 847 | 2e-088 |
| AAF21191 putative RNA-binding protein [Arabidopsis thaliana] | 832 | 1e-086 |
| NP_566321 RNA recognition motif-containing protein [Arabidopsis thaliana] | 832 | 1e-086 |
| AAK92717 putative RNA-binding protein [Arabidopsis thaliana] | 832 | 1e-086 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O53553 Uncharacterized PE-PGRS family protein PE_PGRS54 | 176 | 5e-012 |
| Q9NL38 N66 matrix protein | 157 | 8e-010 |
| P48810 Heterogeneous nuclear ribonucleoprotein 87F | 157 | 8e-010 |
| P10495 Glycine-rich cell wall structural protein 1.0 | 155 | 1e-009 |
| P07909 Heterogeneous nuclear ribonucleoprotein A1 | 146 | 2e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W555 AT3g07810/F17A17_15 | 832 | 7e-087 |
| Q94A00 Putative RNA-binding protein | 832 | 7e-087 |
| Q9SFD3 Putative RNA-binding protein | 832 | 7e-087 |
| C3EFM5 Putative uncharacterized protein | 212 | 5e-015 |
| A0R9A1 Surface protein, pentapeptide repeat domain | 211 | 7e-015 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07810.2 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 848 | 5e-091 |
| AT3G07810.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 832 | 4e-089 |
| AT1G62240.1 unknown protein | 169 | 3e-012 |
| AT2G36120.1 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) | 144 | 2e-009 |
| AT4G36230.1 unknown protein | 140 | 7e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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