RadishBase

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Information for unigene UN19360

FASTA Sequence

Unigene ID: UN19360	Length: 1153	SSR
GGGAATCTCTCATTCAAACAATGAGGCAAAGTACACTGTAAAATAAGTTTTATTTGTTCTTTTCCCTTTCTGCTTCGTCCTCGGTT GAATGCTTATGGTTTTGTTTTGTACATAGTTTCTCGACGTTTTGTCCGTATAAATAACTGACGGTTTCATAAATTTTCTTCTGGGA AAATGAAGGAACATCGTTCATGATTGAATTCATATTAGTAAGGATAATTTAGTTTCAGCGGAAATGAACTGTGGAACTGTAAGAAA GGTATCAAGGCAAGACATCAAACTGTTGCTGCTGCTGCTGCTTCAAACCGACCAAACCGTAAAGATGTTGGCGTCAAGATCCCTGG CTCTAACAAAACCAAACCAGTTATCCCAGTCGGTCCTGGTTTCCAGGCTGAAATTCCGGTTTGGATTGCACCTACCAAGAAGGGGA AGTTTTACGGTAGTCCCGGAGATTCCGACACTCTTAGGTGGCTTGGAGCTGGTGTTTGGCCTACATATAGCTTAAAGAAGAAAGTT TACTACAAAAAGATCGGCGAAGGGAGACCAGACTCATGTTCTTGTCCTACTCCAGGTTCAACCGATTGCGTAAAGCTACACATTAA AGAAGCGAGGGAGCTTCTAGAAAAGGAAACTGGAGGTGCTTTCTATACTTGGAAGTTTGATGAAATGGGTGAAGTGAGATCAAAGT CATGGACGGCCAAGGAAGAGCAAAAGTTTAGATCTCTTGTGAGAAAAAATCCTTTGTCAAATCGTGATGGGTTTTGGAAGTATGCT TCAAAGGCTTTCCCAAGGAGAAGTGAGAAGGATGTCATTAGTTACTACTATAATGTCTTCCTTAACCACCGTAACACCGATGATGA CCACTATGGTGACTTCTTAGCTGGATGAAAGGTAACCCAAGTTTCCAATTTCTTGATACTTAGTGATTCAAGAACATGTTCCATTT CCCCCTAAACTTTTCTATCATAGGATTTTTCTTTTTTCAAAAAGAAATCCTTATAGGGAAAATGCACCAATCTAAAATGTGTTTTT TTCTCAAATTCTAAATAGGGAGCTGTTTTCTTCTTCATGAACTTTGTTGCCTTGTTTCACTCAAGAAACAAACTTGAATATTTCAA ATTTGGAACTTTTATATTCTTAGATCCTTTTTCTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAC05492 putative protein [Arabidopsis thaliana]	690	3e-070
NP_196031 DNA gyrase B3 [Arabidopsis thaliana]	690	3e-070
XP_002273960 PREDICTED: hypothetical protein [Vitis vinifera]	486	1e-046
CAN80959 hypothetical protein VITISV_037562 [Vitis vinifera]	348	1e-030
XP_002276148 PREDICTED: hypothetical protein [Vitis vinifera]	348	1e-030

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q8VY11 MYB transcription factor	690	2e-070
Q9FYF0 Putative uncharacterized protein F21E1_20	690	2e-070
A5BPV8 Putative uncharacterized protein	365	1e-032
A5BAN2 Putative uncharacterized protein	348	9e-031
C5XPV8 Putative uncharacterized protein Sb03g040120	330	1e-028

Arabidopsis top hits (Blast detail)	Score	e value
AT5G04110.1 DNA topoisomerase II family protein	690	1e-072
AT4G11400.1 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein	308	2e-028
AT1G26580.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myb family transcription factor / ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	229	3e-019
AT2G03470.1 myb family transcription factor / ELM2 domain-containing protein	198	1e-015
AT2G03470.2 myb family transcription factor / ELM2 domain-containing protein	198	1e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	3			75%


9	1			25%

Unigene Members	Member information