RadishBase

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Information for unigene UN19375

FASTA Sequence

Unigene ID: UN19375	Length: 940	SSR
GGATAGAATTTGTTTTTTTTTCACATTGAAACCAAACTCATTCATTGCCAGAAACACAGAACAAAAGATATTTTGATACCGAAGCG TTTGGAGACTGTCCAATACATTAAACTAGAGAAAATATATAAAACACCAAAGATCCATAAGCTCCTGCAAAGCAGAGTAGTAGTAA TAACTTGAAACAATCTCATCTGCTATTGTTAAGAATGGAACCCAAAGTTCCCAAAACAGCAAAAGCAAGGAGAGGACTGACGTCAA GCGTGTCAAAGACGGGAGGGATGATGTTCCTGAAGAGATTGAGATAAGGATCACAAAGATCCCTAATGGCTGACAAAGGCTGACGA TCCCAAGGAATGTTCGGGAACCAGCTCAGCAAAACCCTAACCATCAACACGCCACTGTAGATATCTAGCCACTTGGACAAACCAGC CGCGACAACCGTCAACGGAGTGTTGAGATAGCCATCAGGACGATCGCGAATCGCCGCGAAGAACAGAGGACCGGAGACTCGGATAG AGGCTTGAATCTGTGGAGATGAGGTTACGACAGCGTTGGAGAGCTTCTGGACAAGGGCTTTGGTTAGGGTTCCGGCGAGAACCGCG AGGGTCGTGATTGATTTGGTTGAGTCGGAGAAGGGAAATTGAGGAGAGGGTTTAGGGAAGAGTGTTGGAGATGTGGAGGAGGAGGC GGCGGCGGAGACGGAGACGATGGTTTTAGGGTTTCTGAGGGAGAGATTGAAGGAGGGTTTGTAGGGAAAGGAGAGACGGAGAGGGG AATTACGACGATTAAGAGGATGGTGGAATCTAGGGTTGACGAGAACTGAAGAGCGAAGGGGGAGGGTGGTGGTGGTGGTCGCAAAC GCCATTTTAGTTGCTCGGAAAAACAAAACCGATAATAGTAGACAGACAACACGGGAAACAGACAGTTTGCTAAAGATCCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002867475 YGGT family protein [Arabidopsis lyrata subsp. lyrata]	820	2e-085
NP_194528 YGGT family protein [Arabidopsis thaliana]	808	4e-084
AAM64721 unknown [Arabidopsis thaliana]	796	1e-082
AAM66973 unknown [Arabidopsis thaliana]	658	1e-066
NP_566307 YGGT family protein [Arabidopsis thaliana]	655	2e-066

Swiss-Prot top hits (Blast detail)	Score	e value
O78424 Uncharacterized protein ycf19	176	4e-012
P51353 Uncharacterized protein ycf19	161	2e-010
Q1XDD4 Uncharacterized protein ycf19	161	2e-010
Q9TM45 Uncharacterized protein ycf19	143	3e-008
Q9FPQ6 Vegetative cell wall protein gp1	139	7e-008

TrEMBL top hits (Blast detail)	Score	e value
Q9SUE0 Putative uncharacterized protein AT4g27990	808	3e-084
Q8LBK0 Putative uncharacterized protein	796	8e-083
Q8L939 Putative uncharacterized protein	658	8e-067
Q9SRS3 At3g07430	655	2e-066
B9SMM7 Putative uncharacterized protein	573	6e-057

Arabidopsis top hits (Blast detail)	Score	e value
AT4G27990.1 YGGT family protein	818	1e-087
AT3G07430.1 emb1990 (embryo defective 1990)	662	2e-069
AT1G31810.1 actin binding	127	2e-007
AT4G13340.1 leucine-rich repeat family protein / extensin family protein	118	2e-006
AT1G68690.1 ATP binding / protein kinase/ protein serine/threonine kinase	116	3e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	3			25%


8	6			50%


12	3			25%

Unigene Members	Member information