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Information for unigene UN19382
FASTA Sequence |
Unigene ID: UN19382 | Length: 881 |
SSR | SNP | GGATTTTCACTTCTCTTATCATTCTGTCCGCATAGATTGATGTCCATGGAAGAGCTAAAACCTTCGAACAATAAGATTCTTGAGCA
GCTGAGACATGGGCTCGCTCGGTTCGAGCTTGTGTCCTCCCCTACTCTTTCAGTCTCCTCTGCTTCCTTCTTGGGCGCCACGCAGA
GCAATAGCTATGCCTTCTTCGCCAGAATCGGTTCCTCCTTAAATGGGTCTCCAGCAGCGAAGAAGGTTGAGCAGTACGCTGTGGAT
AGAGTTACTGGGGATGGTCGCTGTCTCTTTAGAGCTTTGGTGAAAGGAATGGCCTTTAACAAGGGTCTTACTATCAATCCCCGGAG
AGAGAGAGATGATGCAGATGAACTACGAATGGCTGTGAAAGAGGTTATATGCAATGACCCTAAGGAAAGAGACAAGTACAAAGAAG
CTTTAGTAGCTATCACTGTGGAAGAGTCTCTGAAACGGTACTGCCAGAGGATTGGAAGACACGATTTCTGGGGAGGGGAATCTGAG
CTGCTTGTTCTTTCCAAGCTATGTAAACAGCCAATCATCGTCTACATACCAGAGCATGAGCATAGGAGAGGAGGAGGGTATGGGTC
GGGTTTTATACCGATTGCAGAGTATGGAGCTGAGTTTAGAGGAGGCTGGGGAAAAGGGAACAAGACCAAGAATGTTGTTAGGCTTC
TTTACAGTGGTAGAAACCATTATGATCTGCTTCGCTAGACCTGAGATGATTGAAGTTTTCTACTTCCTGTTGGAATCCATGATTCC
AAATTTGTTTAAAAACTTTCAATGCAAAAAACATGAACATGTACCAGTTCTCCCTTCTCTGCTATAGGTGGATATTTCAATTGAAT
TTGGATTCGGTTCAGTTCGAC
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GenBank top hits (Blast detail) | Score | e value |
NP_850290 cysteine proteinase-like protein [Arabidopsis thaliana] | 906 | 2e-095 |
XP_002881560 hypothetical protein ARALYDRAFT_482809 [Arabidopsis lyrata subsp. lyrata] | 899 | 1e-094 |
XP_002277660 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] | 780 | 7e-081 |
XP_002277681 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] | 638 | 2e-064 |
NP_001049654 Os03g0266000 [Oryza sativa Japonica Group] | 621 | 2e-062 |
Swiss-Prot top hits | Score | e value |
No hits found | | |
TrEMBL top hits (Blast detail) | Score | e value |
Q8GYW0 At2g38025 | 906 | 1e-095 |
B8AKN1 Putative uncharacterized protein | 621 | 1e-062 |
Q10NL4 OTU-like cysteine protease family protein, expressed | 621 | 1e-062 |
C5WQ46 Putative uncharacterized protein Sb01g040060 | 614 | 9e-062 |
B4FU62 Putative uncharacterized protein | 604 | 1e-060 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G38025.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT3G57810.3); Has 100 Blast hits to 100 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | 907 | 5e-098 |
AT3G57810.1 OTU-like cysteine protease family protein | 171 | 1e-012 |
AT3G57810.2 OTU-like cysteine protease family protein | 171 | 1e-012 |
AT3G57810.3 OTU-like cysteine protease family protein | 171 | 1e-012 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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