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Information for unigene UN19398
| FASTA Sequence |
| Unigene ID: UN19398 | Length: 1054 |
SSR | SNP | GCAAGATAAGTTCTTGTTTCAATAAAAAGCATACGAGTCTTCTCGAATAATAAAGTAGAAAATATTTTAAAAGCAAATTGGACAAA
AAATAATACTAAAATGATGGGCAAAACTTAAGATGTTATCAAATAGTTTTCAGAATAGAACACAGATACTCTAGCAGAAGAGTTTA
CTAAGAAAAAGAAACACAGCAAAAAAGAAACAGAATACAGGGTCCATTATGTTGTGGATCATCCCCTCCCTATTCGTCGTCATCCT
CACTCTTTGACTTCTTCTTCTTCTTCGATTTCTTCTTGCTCTGACCACCATCATCAGTCTCTTCCTCTCCTCCAGACTTGCTCTTC
TTTTTCTTCTTCTTCTTCTCTGATTTCTCATTCTCCTCTTCTGTCTCCATCTTCCTCTTCTCTTTCTTCTTCTTTTTCTCTGACTT
CTCCTCATCCACTGCCTCCTTCCCTTCCTCATCTTTGTTTTGCAGATTCTCTATCACCTCCTTCATTACATCTACGTTCTTGCGTG
GAGCAACACCTTTGTCGTAAAAGTCTAGCCTTTCCTCTACTTGTTCACGAAGCTTCTCACCAAATGCCGTTGTTGCTCCATCAGCG
AAACAATCAATACGGGAAGCTATAGAGCACTTGTTTGCAAGATAACGAGCGATACGGCCCTTGTTCTTAGCAGATGCTCGGCCAAT
GAAGGACGAATGGAAAATCAACCCATACTTGGGTGTGTTTCCTCGCGTTTTAAGCGCCCTGAAAAGCGCCTTCTCGGCTCCGAGAA
TCTGGAGGGTAGAAGATGGGCACTTGGCAAGGTTAGTCAGACTTCCAGCATGTGAAATGAGACGGGCACCGACCATATCTCCAATC
AAGGCGGCCAAATTAGGGGCAATGTCGCTCATCTTAGCAACAAGGTAATCATAGAGCTTCTTCCTGTAGTCAGCGAGGTCCATCAC
TTTCTTTGCAAGGTCTGCACGTTTTGATCAGTCAGCGGTGATAAATCCTGGCCCATAGATGCTTTTCCAGCTTCGACGACCTCCTT
TGCTTTATCCTCATCCCCTAAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894559 hypothetical protein ARALYDRAFT_474678 [Arabidopsis lyrata subsp. lyrata] | 943 | 1e-099 |
| NP_176007 homolog of nucleolar protein NOP56 [Arabidopsis thaliana] | 925 | 1e-097 |
| NP_187892 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana] | 923 | 3e-097 |
| XP_002882791 hypothetical protein ARALYDRAFT_478647 [Arabidopsis lyrata subsp. lyrata] | 913 | 4e-096 |
| XP_002322238 predicted protein [Populus trichocarpa] | 884 | 8e-093 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9D6Z1 Nucleolar protein 56 | 705 | 2e-073 |
| Q5RA29 Nucleolar protein 56 | 693 | 5e-072 |
| O00567 Nucleolar protein 56 | 692 | 7e-072 |
| Q3SZ63 Nucleolar protein 56 | 690 | 1e-071 |
| Q95K50 Nucleolar protein 56 | 688 | 2e-071 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SGT7 At1g56110/T6H22_9 | 925 | 1e-097 |
| Q9LTV0 Nucleolar protein | 923 | 2e-097 |
| B9IF81 Predicted protein (Fragment) | 884 | 6e-093 |
| Q0WVV7 Putative nucleolar protein (Fragment) | 845 | 2e-088 |
| B9RAI8 Nucleolar protein nop56, putative | 827 | 2e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12860.1 nucleolar protein Nop56, putative | 934 | 5e-101 |
| AT1G56110.1 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) | 925 | 6e-100 |
| AT3G05060.1 SAR DNA-binding protein, putative | 475 | 9e-048 |
| AT5G27120.1 SAR DNA-binding protein, putative | 472 | 2e-047 |
| AT5G27140.1 SAR DNA-binding protein, putative | 410 | 3e-040 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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