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Information for unigene UN19408
| FASTA Sequence |
| Unigene ID: UN19408 | Length: 572 |
| SNP | TGGAAAAGGGGAGGCGCACGAGCAAGTCAACTTGACACAAAAGAAGACTCCCCTCTTAATAAATTCCTAATTCTTTCGTGAAAGCA
TTTTTAACCCATTCGTTGCGTTTCTTCTGCATTGACCGTCGGATCGCCTCGTCCTTACGCGAATTCACAACAATGACTCGTGGAAG
TCAGAGAGAGCGTGACCGTGAAAGAGCTGCAGCTCGTGCTGGAGGAAAGGGAAAGAATGCTGACGACGGGTTGACGCCTGAGCAAC
GCCGTGAAAGAGATGGAAAAGCATTGCAAGAGAAGGCAGCAAAGAAGGCTGCTCAAGCTGCAGCCGCTGCAGCTTCTGGTGGAAGC
AAAGGAACTGCTAAGAAATGATCCTTTTCGTTTCTCCTTTGGGCTTATTTGTAGACTTATTACATTTTTCTTTATTTCTCTCAAAA
TGTGGGTTAACTTAGACTTGAGCTTTGCTCTCGTCTGAATCCGAACTATACTGTCTTTCGTGTTGAAAATTGCAAGTGTGGTACCT
TATTTGGTCTTTATATGATTGGTTATAAAGTATAATTACAAATTTTAACATATATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002870371 expressed protein [Arabidopsis lyrata subsp. lyrata] | 292 | 1e-024 |
| NP_849375 uncharacterized protein [Arabidopsis thaliana] | 288 | 3e-024 |
| NP_189052 uncharacterized protein [Arabidopsis thaliana] | 277 | 6e-023 |
| XP_002885614 hypothetical protein ARALYDRAFT_898961 [Arabidopsis lyrata subsp. lyrata] | 270 | 4e-022 |
| ABK93321 unknown [Populus trichocarpa] | 266 | 1e-021 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GXU7 At4g13612 | 288 | 2e-024 |
| Q94K36 Putative uncharacterized protein AT3g24100 | 277 | 4e-023 |
| A9PAB8 Putative uncharacterized protein | 266 | 8e-022 |
| Q9LRN7 Genomic DNA, chromosome 3, P1 clone:MUJ8 | 262 | 2e-021 |
| C6SZT0 Putative uncharacterized protein | 241 | 6e-019 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G13615.1 four F5 protein-related / 4F5 protein-related | 288 | 2e-026 |
| AT3G24100.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Four F5 protein (InterPro:IPR007513); BEST Arabidopsis thaliana protein match is: four F5 protein-related / 4F5 protein-related (TAIR:AT4G13615.1); Has 195 Blast hits to 195 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 12; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | 277 | 3e-025 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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