RadishBase

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Information for unigene UN19427

FASTA Sequence

Unigene ID: UN19427	Length: 1441	SSR
AACAAAATTTAGAATTTTTTTTTTACAAAATAATAATAATAATCAAAAACACAGAGAAGAAAAAAAATAAAATGGTGGATACAGAT TGCAAGAGGAAGATGGTGTCACCGGACTTACCTACCAAGCTCCACGTCACCATCCCCTCCCCGTTCAAGCAGCTCCCTGTCTCATC TCCCATCTCCGGCTCCGCTCCATCATCTTGCTCCGCCTACGAGGTCTACCTCCGTCTCCCCGAGCTCAGAAACCTCTGGTCGTCAC GTGACTTCCCTCGCTGGTCTCACGAGCCTATCCTCAAACCCTCTCTCCAAGCTCTAGAGATCACTTTCAGATTGGTTTTGGCCGTT TGTTCCGACGCACGACCGTACATCAACCACCGCGAGTGGAACCGACGGTTGGATTCGATCCTCACGTATCAGATCAAACTCATAGC AGCCATCTGCGAAGAGGAGGAAGATGATTCGGTTCCTGTCGGAGATGGACGAAGCTCTCTCAGCTTGCTACCACAGCTAGCCACGT GGCGCAAGTCCGAAGCCTTTGGGAAGAAGATCTTGTGTACCATCGATAACGAGATGAGGTTTTGTAAGTACACGCTCGGACTCGGA GAACAGAACATCTCCGGGAAACCTAATCTCTTATACGACGCCGTTTGTAAACCGAACGTGGTTTACAGCCTCAGGGACAACCCGTA CGCGGATCATATCGATAACGACGAGAACCAAACGTTATATATCCTTCACCAGATCATAGAGTCGTGGCTCCACGTTTCTGTAAACC TCTTGAGACGCATCAACGCGAGTGTTGACGGAGGGAGGTTCGGAGAAGCGTCGAGAGATGTCTACTTGGTGGAGAGTATATGGAAG CTTCTCATTGAAGTCGAAGATCTCCACCTCCTGATGGATCCCGAAGACTTCCTCAAACTCAAGAAGCAGTTACATATCAAGACGAC CGGTAAAAACGACGCGTTTTGCTTCAGGTCTAAGGGATTAGTGGAGATGATGAAGATGTCTAAGGGTCTTAGCGAGAAGGTGCCTG CCGTGCTGGGTGTTGAGGTGGATCCCACGGGAGGACCGAGGTTGCAAGAGGCGGCGATGAGGCTCTACGCGAGAAAGGGAGATCAG TGTGATGATAAGGTTCATCTGCTTCAAGGGATGCAAGCTGTGGAAGCTGCGGCGAAGAGGTTCTTCTTCGCGTATAAGCAGGTGGT TGCGGCGATGATGGGAAGCGCGGAGATGAACACGGAGTGTGACTCTGTGAGTCAGATATTCATGGAGCCGACGTATTTCCCGAGTC TTGACGCGGCCAAGACGTTCTTGGGAGAGTTCTGGAGCCACATTGGATGAACAAAACAATTCTTTTTAAATACAGCTTTTATATTT TATATAAATTGGTGATTAGATGTAACTTTAATGAAATTTTTGAATACAATTCATTTTATACGATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAO00756 Unknown protein [Arabidopsis thaliana]	1758	6e-194
NP_181529 HS1 PRO-1 2-like protein [Arabidopsis thaliana]	1755	1e-193
AAM64956 putative nematode-resistance protein [Arabidopsis thaliana]	1747	1e-192
XP_002881690 hypothetical protein ARALYDRAFT_483040 [Arabidopsis lyrata subsp. lyrata]	1725	4e-190
XP_002878047 hypothetical protein ARALYDRAFT_486026 [Arabidopsis lyrata subsp. lyrata]	1496	1e-163

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q8GUL9 Putative uncharacterized protein	1758	4e-194
O04203 AKINbetagamma-interacting protein 2	1755	9e-194
Q8LB61 Putative nematode-resistance protein	1747	8e-193
Q9LY61 Nematode resistance-like protein	1477	2e-161
Q2QCL4 AKINbetagamma-interacting protein 1	1476	2e-161

Arabidopsis top hits (Blast detail)	Score	e value
AT2G40000.1 HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)	1756	4e-196
AT3G55840.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) (TAIR:AT2G40000.1); Has 43 Blast hits to 43 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	1477	8e-164

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


19	2			4%


21	33			66%


18	3			6%


20	12			24%

Unigene Members	Member information