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Information for unigene UN19436

FASTA Sequence
Unigene ID: UN19436Length: 967 SSR 
ACTTGCACCTCACCTCCCTCACGTGCACTTCCCCTCCAACTTCCTCGTCCACTTCTTTCCACGTCTCCGCCGATCCACACGACACG
ACCGCCGCTACCTCCGCCGCTCTCTTCCCCATCACCATCCCCACCACCGTCGAAAATCTAATCTCCAAATCTCCGGTCAACCAGTT
CCGCGTCGCCGAAACTGCGTCCCTGCTCGATATATTAGCCGCGCGTTTCTTTACCGGATCGATCAGTATCCAGTTGAGCTTCATGC
TTTCTTCCATATCTCTCACCCACGCTTCGTAGTCCCCACCGGGGTATGGAACCCGGGTATTAACCGATTCTTTCGCGTCAAGGATA
TCGACCCGAAAAGGAGCCGACAAAAACCATCGTCCTGTTTCCATCTCTTGGACCTTAGAGTAGATTAATTCTCCTCGGTAATACAG
GTCAACGGCTGAGATTAATCCAGTTGTTGGTGGATCGTCTTTTTCAGACGGCCATGTGTGTTCACTGAACGGGTACGAGTCAGCGA
AGAAGGAGCGGTACCCGGAAGGGAAGGAGGAGATGGCCTTGATGATACGTGGATCGTCGATAGAAGGCCACGTGGCGGTGGAGAGT
TCTTGCCAGAGCTTATGTTCGGTGCAGAGAGTTTGGAGATAAGAGGATGTTGATGCGGTGGAGGTAAGCGTCGGACCGTCGAGTCT
GGTTAGGATTTGGGTTTGAATGATGTCAGGATGAAGGGTTGAGATTGAATCACCGTTGCTACATGCCATTTAGAAATGGGAGAATT
TTTTTTTTTTTTGTGTGTGTGTGTGAAAAGGAATGTATAACGAGATGATTATATAATGAATGAAGTAATGATATAAGGAGGCGATG
GTTCAGTCAACCGTTGCTCCTTTTAGACTATTCTATTTCGATCGAGGTGCATGATTGTATGTATTTTTTCTATGTTTCTGTAGATA
AATAAATGTATATACACGCTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_180299 F-box protein [Arabidopsis thaliana]10755e-115
XP_002880905 F-box family protein [Arabidopsis lyrata subsp. lyrata]10747e-115
XP_002523851 conserved hypothetical protein [Ricinus communis]5782e-057
XP_002328106 f-box family protein [Populus trichocarpa]5657e-056
XP_002313604 predicted protein [Populus trichocarpa]5522e-054

Swiss-Prot top hits (Blast detail)Scoree value
Q9XIN8 F-box protein At2g2731010752e-116

TrEMBL top hits (Blast detail)Scoree value
B9SCY2 Putative uncharacterized protein5782e-057
B9MYU0 F-box family protein5655e-056
B9HQ35 Predicted protein5522e-054
B9SCY1 Putative uncharacterized protein5262e-051
A5C3G1 Putative uncharacterized protein4893e-047

Arabidopsis top hits (Blast detail)Scoree value
AT2G27310.1 F-box family protein10752e-117
AT3G44326.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G27310.1); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4685e-047
AT2G36090.1 F-box family protein3252e-030

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
191  33%
 
212  67%

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