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Information for unigene UN19441
| FASTA Sequence |
| Unigene ID: UN19441 | Length: 1239 |
SSR | | ATGGAAGGGAGATCATGGAAATTGCAGAGCTTAAAGGAGGATACCACATTCGTGAATGGCAACAAAAGCTTCTCACATGGCAGCTA
GCTTATCCCAATGGGTCCGCAGAGGAATGCAAGGATTGGATGAGGCAAGTAAAAGCAAAACGACAACGGACAGAATGATGACTTTA
GAATCTGGAGCCTCGCTCAATCTTTAAAATCAGTTTCACATTGTAGTTTAGTTAAAACGCAGATGTCTAAAAATTTCATTTCCATA
TTAACATAAAATCTCCTTACAAATTACACAAGAAACACAGACAAAGGAGAGAGAATAACGATTGTTGGTCACCGTTTTTTGGACTT
AACAGCCACAACGTCTTTATAGAGCTTAACACGATCCTTCAACGCATCCCGCCTAGGCCGAGCCACCTTATTGTTAGGATCAAACA
ACAAGACCTCTTCAAACGCTTTCAACGCCAAAGGAAGCTCTTTTTTCTGCTCATAAGCATCTCCAAGGTTGTTCCAAGCCGTTACA
TAACCAGGTTGCAGTTTCACGGCCATTTCGAACTGAGCGATTCCTTTTTCTAGTTTCTCCTCTCGAACATAACTCACTCCAAGAGC
GTTATAGACCTGAGCAAGATCCTGGTCATCACCGTCCCATTTCTGGATGGCTTGAAGCAAGAACTTGTTGGCTGCAGGATAGAACT
TCCGTCTCAGCATCACTGCACCTAGCTCAAAGAGCTCTGTTGCACTTGCATCCCCGCACCTAACTTGTTCCTGTAGTTCTTTGGCG
GAGAGGTCAAGTTCTCTGCGGACAAGTACTTGACGAATCACATAGAAAGTACCAACCCCGAGCAAACCAAGTAGTAACAACAAGTA
AGAAAGCTGAATACTTAGTTCAAACAACTCTCCAACTTCGTAAACAGGTTCTGGCTTAATAATAGTTTCTGCTGCTGCTGCTGCCA
ACTGTGGGTTAGCAGCAGAGATGATCAACAAGCTTTGGCCCAGCAAGAAAGTAGAGCCCTTTACATGCATCTTCTTCAAGGAAGCT
TTGTTTAGAACCGGTAAGCCTCTAGCAACAAATTCTCCAGGCAAGTTGACCCTTCCATGTATCTGAAAAGATATCTTTTTGGGCGA
GAGCTTGAGTGAAGGGAAGATCTGAGAATGAATGGGAGGAGAAGATGAAGACACAGTGTGAAAGCATCTTCAGTTCGATCATAAGG
TCTACAAATCGCACTGAATTTCTAGAATCGACCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564178 tetratricopeptide repeat-containing protein [Arabidopsis thaliana] | 1172 | 4e-126 |
| XP_002893245 tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 1172 | 4e-126 |
| NP_850950 tetratricopeptide repeat-containing protein [Arabidopsis thaliana] | 1144 | 8e-123 |
| AAM61445 unknown [Arabidopsis thaliana] | 1121 | 3e-120 |
| AAC25516 Contains similarity to ycf37 gene product gb|1001425 from Synechocystis sp. genome gb|D63999. ESTs gb|T43026, gb|R64902, gb|Z18169 and gb|N37374 come from this gene [Arabidopsis thaliana] | 989 | 7e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O94474 Superkiller protein 3 | 127 | 3e-006 |
| Q96301 Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY | 127 | 3e-006 |
| O82039 Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY | 125 | 5e-006 |
| Q8RVB2 Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY | 125 | 5e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94EJ1 At1g22700/T22J18_13 | 1172 | 3e-126 |
| Q3ED72 AT1G22700 protein | 1144 | 5e-123 |
| Q8LFF4 Putative uncharacterized protein | 1121 | 2e-120 |
| O80551 T22J18.13 protein | 989 | 5e-105 |
| B9SLH4 Tetratricopeptide repeat protein, tpr, putative | 880 | 2e-092 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G22700.2 tetratricopeptide repeat (TPR)-containing protein | 1173 | 1e-128 |
| AT1G22700.1 tetratricopeptide repeat (TPR)-containing protein | 1168 | 5e-128 |
| AT1G22700.3 tetratricopeptide repeat (TPR)-containing protein | 980 | 3e-106 |
| AT1G22660.1 tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative | 239 | 2e-020 |
| AT1G22660.2 tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative | 216 | 1e-017 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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