RadishBase

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Information for unigene UN19449

FASTA Sequence

Unigene ID: UN19449	Length: 1562	SSR
GGAAGCTAAAACGCTTAACTCCAAAACAGAAAGTCAAGTGGGTTTTGGGTTTGCCGAGCTACTTGTATAAATAGAGCCAAAACCGC AGTCTCTTCTTCCATCAAACATTCTTCATTAGATATTTTCTCTTCTACTATTTTAAGCAAACAAAAGAATTTTTTATAGTAAAGAA ATGGAAGAAACAAAGGAGAGAAAGATCGTAGTAGCAGTGGACGAGAGCGAAGAGAGCATGGAAGCTCTTTCATGGAGTCTTGACAA TCTTTTTCCATATGGTTCCAATAATACCCTCATCCTCCTCTACGTCAAGCCCCCTCTTCCCGTTTATTCTTCCATTGATGCCGCAG GGTTTATAGTGACCGGAGATCCGGTTGCAGCCTTGAAGAAATACGAAAATGAGCTTGTGGAATCAGTCATGGCTCGATCTCGAAAC GTCTACCAAGATTTTGAGTCCGATTTTAATATAGAGAGAAAAGTTGGAAGAGGAGATGCCAAGGAAGTAATATGTAACGCAGTTCA GAACCTTAAGGCTGATATGTTAGTTATGGGCACACATGACTATGGCTTCTTCAAAAGGGCTTTGCTAGGCAGTGTGAGCGAGTATT GCGCCAAACGTGTGAAGTGTCCTGTGATTATTGTGAAGAAGAATATGCCTCAAAATAATTGAGCTCAAAAGTCACAAGTCTTATGA TTATGTATGTTTGAGAGCAATTGATGCAAATAGTTGAATCAATATTCGTATGCAATCATGTATATTATATATATATATATATATAT ATATATATATATATATATATATATATATATATATATTGTCATTTATAATATTAAGTCTACAGATTATTATTAGATTATTATTCTAT TAACTAATACATTTTATTTATGTTTAAATCCTAACAACTAATCATGATAATTATTTATTAAATATTTGTATTTTCCTAAGATAATG TGAGATAAATTTCTATATAGTATTATGATTAAAAGTTTTAAGTGATTTTATTTTCCTTTTCCATAAAACCAAGCTAATTCTACCAA TTGATTGCATGAATGTACCAATATCTAGCTTCACAAATATTCTGGATTTACATTAACTGAAAGGTAATTTATAAAATCAGAAAATA TTCATAAATCTGGGGAATATTTTTTTTTTTTCAAAAAACAGTTAAAAATAAAATTTCTTAAATAAATATAAAATATAAATTCAATT TTTTGTTGACAAATAGAAGATTGTAACTAATTTATTATAATCAAATGTCAATGTTACAATTTAATTTATACATATTTTCTTTATTC CCAAAATTAATTTTAGGAAGAAAATTTTAACAACAATGAACTAAAATGTCCAGAACATCATGGCCCAATGGTAAGGACGAACTCCT TCCTACATCCATGTTATGAGTTCGAACCCTGCTGGAGAGAACTAAGTCATGATTTCTGGATACCAACACGATATGGGCCTATGCTT TAGGGCCCATTTGCATACCCGGAGAAAGGGTCTATCTGTGGGCTGCACCTCCCCTTGGGGATTAGTCTGGGCCCTTCCATAGGTCC GGGAACCCCTAGGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191814 putative adenine nucleotide alpha hydrolase domain-containing universal stress protein [Arabidopsis thaliana]	762	2e-078
XP_002876676 universal stress protein family protein [Arabidopsis lyrata subsp. lyrata]	746	1e-076
XP_002515296 conserved hypothetical protein [Ricinus communis]	519	3e-050
XP_002275863 PREDICTED: hypothetical protein [Vitis vinifera]	511	3e-049
CAN63475 hypothetical protein VITISV_016798 [Vitis vinifera]	504	2e-048

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q93W91 Putative uncharacterized protein At3g62550	762	1e-078
B9RNF7 Putative uncharacterized protein	519	2e-050
A5BGX7 Putative uncharacterized protein	504	1e-048
A9PH23 Predicted protein	470	1e-044
A9PK69 Putative uncharacterized protein	467	2e-044

Arabidopsis top hits (Blast detail)	Score	e value
AT3G62550.1 universal stress protein (USP) family protein	762	7e-081
AT1G09740.1 ethylene-responsive protein, putative	269	1e-023
AT3G58450.2 universal stress protein (USP) family protein	218	9e-018
AT2G47710.1 universal stress protein (USP) family protein	216	2e-017
AT1G68300.1 universal stress protein (USP) family protein	198	2e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	6			60%


18	2			20%


19	2			20%

Unigene Members	Member information