 |
Information for unigene UN19462
| FASTA Sequence |
| Unigene ID: UN19462 | Length: 991 |
| SNP | GGGGGACACAACACAACACAACATGAACTCTTCTTCCTTCTCATTTTTGATCTTCACCGTTGTTATCATCCTCCGGTGCCTAAACC
CCGTCAAAGCCGCCACGTGTCATCCAGATGACGAGGCAGGTCTTCTAGCTTTCAAATCGGGTATAACCCGAGATCCTTCGGGTATT
CTCAGCTCATGGAAGAAAGGCACTGCTTGCTGCTCCTGGAACGGTATCACCTGCCTCACCGGCGACCGAGTCACCGCACTCACTGT
CAGTGGACAGTCCGATGTAGCCGGAAGCTTCCTCTCCGGCACAATCTCCTCGTCGCTAGCCAAACTCCAACACCTCGATGGTATTT
ACTTCATGAATCTCAAAAACATCACTGGACCTTTCCCACAGTTCCTTTTCCAATTACCACAGCTGAAATACGTTTACATCGAGAAC
AACCGTCTCTCCGGTCCACTACCGGTTAACATCGGTTCCCTAAGCCAGATTGAAGCGTTTAGCCTCGAAGGAAACCGGTTCACCGG
TCCGATCCCAACTTCCATATCAAATTTAACCAAGCTATCTCAGCTCAATCTTGGCGGTAATCTCTTAACCGGAACAATCCCTTCAG
GGATTGCTAACCTCAAGCTCATGTCGTATCTGAATCTCGGCGGTAACCGTCTCTCCGGAACCATCCCGGATATTTTCAAATCCATG
CCGGAGCTCCGATCTCTCGTTCTCTCTCGCAACGGATTCTCCGGGAACCTTCCTCCGTCGATCGCGTCGCTCGCACCGATCCTCAG
GTTCCTCGAAGTAGGCCATAACAAACTCTCCGGGAAGATTCCAGACTACTTATCGAGGTTCAAGGCGCTCGACACGTTGGATCTCT
CGCGCAACCAGTTCTCCGGAGTCGTGCCGAAGAGCTTCGCGAATCTCACCAAGATCTTTAATCTTGATCTCTCGCACAATCTTTCT
CACGATCCGTTCCCTGCTTTGTACGTTAAGGGAATCGAGTCTTTG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ33927 unnamed protein product [Thellungiella halophila] | 1441 | 2e-157 |
| AAG26075 hypothetical protein [Arabidopsis thaliana] | 1438 | 4e-157 |
| AAM60932 putative disease resistance protein [Arabidopsis thaliana] | 1438 | 4e-157 |
| XP_002891050 hypothetical protein ARALYDRAFT_890938 [Arabidopsis lyrata subsp. lyrata] | 1433 | 2e-156 |
| NP_564426 leucine-rich repeat-containing protein [Arabidopsis thaliana] | 1426 | 1e-155 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P93194 Receptor-like protein kinase | 370 | 1e-034 |
| C0LGQ5 LRR receptor-like serine/threonine-protein kinase GSO1 | 360 | 2e-033 |
| C0LGW6 LRR receptor-like serine/threonine-protein kinase ERL1 | 359 | 3e-033 |
| Q8VZG8 Probable LRR receptor-like serine/threonine-protein kinase At4g08850 | 345 | 1e-031 |
| C0LGS2 Probable LRR receptor-like serine/threonine-protein kinase At4g36180 | 336 | 1e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LGC3 Putative disease resistance protein | 1438 | 3e-157 |
| Q9FW47 Putative uncharacterized protein T1E4.3 | 1438 | 3e-157 |
| O48705 Putative disease resistance protein | 1225 | 1e-132 |
| Q9FW48 Putative uncharacterized protein T1E4.2 | 1165 | 1e-125 |
| B9SHN0 Serine-threonine protein kinase, plant-type, putative | 1043 | 2e-111 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G33590.1 disease resistance protein-related / LRR protein-related | 1426 | 4e-158 |
| AT2G26380.1 disease resistance protein-related / LRR protein-related | 1225 | 9e-135 |
| AT1G33600.1 leucine-rich repeat family protein | 1170 | 2e-128 |
| AT1G33610.1 protein binding | 1033 | 2e-112 |
| AT1G33670.1 leucine-rich repeat family protein | 727 | 5e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
