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Information for unigene UN19476

FASTA Sequence
Unigene ID: UN19476Length: 1450 SSR 
GCTCTTCAATCACATTTGTAAACACAAAAAATTGCACCACACTGTTTAGGTCATTGTTTTCCAACAAAATACATAGCCAAAATCAG
GTCTTACTTCCCTACATTCCCTGTCTGAAATCACAAAAACCCAACGGAAAGAAACCAAAAAGAGTACAGAGATAATATGATTCGTA
AAGCCACAAATAGTAACAATGGCTCTCTCCAGACTGATTCATCGTAGAAGAATACCATCATCATCATCATCTCATCTTCACCCCCA
AGAATCCATTATAGCTATCCATGAGGCTTCTTATATGTACATCAATTCTTTGTTGCTTCGTTTCCGGTTTACTCTTCTTTCCAGAT
TCGACCGGTCACCCTCAACTTGAGTTCTTGCCTATCACCTCCAGAGAAGTATAGTGCGAGGTTTCTAGGAATGATGAGACCGTCTT
GACTGTCCCTAACTTTCCTGTGACTGTCACGGATGCTTCTAGGGATCCCTTGCCATGTTAGTTTACGTCCATGAGCTCCCACTTCC
AAGCTGTAACTGAACTTCTTTGCCTCGTTTTCATCTCCCATGAAACGAAGAAACGCCATGTAAACTGGAGCCATCCCCAGCTGGAA
CGCCTCAAAGTGTAAACAGAACTGTCTCCCGAAACAGTTGAACACCGTAAGCATCCATGTAGCATTCTCAACTTCATGTGGGTTTG
ATTTCACATAACGGTGGTTGAAAGTGCACCCGTCATGCATATCGACTTTATGATCATCTTTGAGATGAACAACAAGCGTGGGGATG
TCACCTGTAACAGAACACTCAGAGCCAGCATAAGGGCAAGCGTAAGGCCTAAACCTGCAGTGCTGCTCGTGCTTAAGCTTGCTGTA
GTAAGGGAAAATGTCATGGCACCCCAAACTTTGGTAGCGGCATGGAACTTCCAAGGACTCTGCAACTTTCTCGAGAGCTAAGCATC
TTATGTTACCAAGCTCGTAGCGACATGTAGGGCAAGTGTTCTGCACTCTTGCTTTGCGGTTTGAACATAAAGTGTGGCCATTTGGA
CACTGATGAATTGGAGGGTACATTAGATTAGTACAGACTGGACACTCAAGAAGCTCGTAGACACCATTGTTTGAATGCATCCCATA
TTTTCCAACTCCTGCGCTCCCTGACTTTGTAGGTTTGTTGTTAGTATTATTATTAACTTCGGCTTTCGCCATTTTAACCTCGTAAT
CCATCCCTGTTGAAGTAGATTCAAGGACTTCTTTCAAAGCACTGCCTCCAGGAGCCATAGTGAGTCAAATGAGATGCCTTTGTATC
TAACTTGTAGTAAGATGATTTGCTCTTTTTGGATTTATTTTGTTATTCTGGAAACAAAAGTTTAGAGTTGGTGTTTATTTGTGTTT
TGTTTGATTCAGATTCAAATCTAAGACAAGAAATCGATGGGTTTTTAGAGGAAAACGAAATATTTGAGGATTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002876454 seven in absentia family protein [Arabidopsis lyrata subsp. lyrata]16295e-179
NP_191363 E3 ubiquitin-protein ligase SINAT2 [Arabidopsis thaliana]16171e-177
NP_181729 ubiquitin-protein ligase SIAH1 [Arabidopsis thaliana]15061e-164
XP_002881813 seven in absentia family protein [Arabidopsis lyrata subsp. lyrata]14996e-164
XP_002308357 predicted protein [Populus trichocarpa]14217e-155

Swiss-Prot top hits (Blast detail)Scoree value
Q9M2P4 E3 ubiquitin-protein ligase SINAT216338e-181
P93748 Putative E3 ubiquitin-protein ligase SINAT115388e-170
Q84JL3 E3 ubiquitin-protein ligase SINAT312134e-132
Q8S3N1 E3 ubiquitin-protein ligase SINAT511678e-127
Q9STN8 E3 ubiquitin-protein ligase SINAT411614e-126

TrEMBL top hits (Blast detail)Scoree value
B9HA10 Predicted protein14215e-155
B9T806 Ubiquitin ligase SINAT2, putative14162e-154
B9IIA7 Predicted protein13768e-150
C6TM08 Putative uncharacterized protein13713e-149
Q9XGC3 SINA2p13695e-149

Arabidopsis top hits (Blast detail)Scoree value
AT3G58040.1 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding16345e-182
AT2G41980.1 seven in absentia (SINA) family protein15395e-171
AT3G61790.1 seven in absentia (SINA) family protein12133e-133
AT4G27880.1 seven in absentia (SINA) family protein11614e-127
AT5G53360.1 seven in absentia (SINA) family protein9212e-099

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
75  100%

Unigene MembersMember information