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Information for unigene UN19478
| FASTA Sequence |
| Unigene ID: UN19478 | Length: 1409 |
SSR | | TTTCAATACTATATGATTACACAATAGTCGAGCTTTCATAATAATCTTAGAAAAGGCTCAAGACATTACAAACACTGCAAAGATGC
AAAACATTAGTTGTCCTTCTGAGAAGGCATAAGGCATAGTCTCTCTTCCGAGACTTGTCCACGATCACCACCAAAGTACCTCTCTT
CAGCGAGCAACGACTGTAAATCACTTCCGTTGGCTAAGCTATTGAACTCAACAGCTTTAGAAGGCATAGTTGGATAACGTCTCTGG
CAGAACGTCATCAATCTTTTAACCGACTGAAGATACTTGCGAGTGGTCTCGTCGTTCATGATGTGAGCAACACTGTTGGTGTGAAT
CTTCTCTCGCGCAGAACGCTCGTGGATACCAACCATAGTCACACCGATGGGCCACGGTGCGTTTCCTATGGCTAGTTTGATGTAGT
GATCCATCGCAGCTAGGTAGTCTCGCTTTATGCAGTGCTTAACCATCACCATTAACGCTTGACGAATATCAGATGGCAAACCCTTC
TTCCTGCATAAGTTGAAGAGAGGAGTAAGATACCTAGCACACTGCTTAAAAGTGGCAACATTCTTCTTCCCTTTAGCAGTTCTCCT
CTCAGTGTTCTCCACAGCATCAAGCTCCTGTTTCCACTCAATCAACAGCTTCTTGTAAAACACAAGAATCTTATCCTCATCACATA
GATCCTCGAAATTAGATTTCAAACGCTTCAAATCCTTATCAGCATCAACATCACTAGACTCACCACCACCACCACTAAGCTCATCA
TCATCATCCCTCCTCTCACCTTCCTCTCTCCCAGTCTCGTCTCTAGTCTTCTTCCTCTTCCTATCTCCCCATGATCCCACTCTTCT
GCCTCTTCTTCATCTCAGAGATGTCACGCAAGAAATCGTTCGTCTGCCCGTCGGTCACGTCGCTGTCGACCTCGAACAGTCCTTCC
TTCAACACGTACTTGAGCCGATCGAGACGAGCCTGATCGTCTTCCCCGAAGAGGAGTCGTCGGCTGCTTGAGGATCCTCAATCGTC
GAATCACTTCTTGCTTAGGGAGAGCTAGGGTTTCGATGTTCCTCTCGTCCGCTAGGGATTTGGAAGAATCGGCGATGATCGCAGCC
GCTGCCTCCGATGTTAAAGAGCCAGGTGCAGATGAATCGGTTGATGACTTACTACCACCGGTGCTAGATGCTTCGGCGGCGGAGGC
GGAGGCTCTACGCTGAGCCTTGAGCTCGTGCTCGCGTCGCTCTTCCTCGCGAAGCTTCTGGAGTTTCTTCTGCTCAATCTCGGATC
GTTTGTAGAACTTCTTGCCACCAGCTTCCTCGGAGAGACTCTGCCTTTTCTTCAGAATTTCTTGCCTGAGTAAATCCATCGGAAGA
AGGTTCCTTCAATCGAATCGCCGCCGAGGACTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_563676 splicing factor Prp18-like protein [Arabidopsis thaliana] | 1137 | 6e-122 |
| XP_002892149 splicing factor Prp18 family protein [Arabidopsis lyrata subsp. lyrata] | 1125 | 1e-120 |
| XP_002278267 PREDICTED: hypothetical protein [Vitis vinifera] | 963 | 9e-102 |
| XP_002520726 potassium channel regulatory factor, putative [Ricinus communis] | 956 | 6e-101 |
| XP_002307588 predicted protein [Populus trichocarpa] | 901 | 1e-094 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q2HJ41 Pre-mRNA-splicing factor 18 | 460 | 8e-045 |
| Q99633 Pre-mRNA-splicing factor 18 | 460 | 8e-045 |
| Q8BM39 Pre-mRNA-splicing factor 18 | 460 | 8e-045 |
| Q5RE03 Pre-mRNA-splicing factor 18 | 460 | 8e-045 |
| Q9JKB8 Pre-mRNA-splicing factor 18 | 457 | 2e-044 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SA55 F10O3.3 protein | 1137 | 4e-122 |
| B9S407 Potassium channel regulatory factor, putative | 956 | 4e-101 |
| B9H894 Predicted protein | 901 | 9e-095 |
| A2YMU9 Putative uncharacterized protein | 866 | 1e-090 |
| B9FY09 Putative uncharacterized protein | 866 | 1e-090 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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