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Information for unigene UN19488
| FASTA Sequence |
| Unigene ID: UN19488 | Length: 1644 |
| SNP | GGTTGCACAGTCAGACGTGAACATTCGTAATGTATTTGGATCTTCGGATGATGAAGATGCAAAAGAGTATGTTCGGAATGACATTG
AGGCTGATGAACCTAGATCGCCAATGGAAGATGAAGAGGGTTCTGAGAAGGATCAGAGACCTGACGATACGATGCTCGATGATGAT
ATGGTCCCTGAAGAGGATCCTCGATACGAGTCAGAAGATGAGCGTGTTGAAGTTAGGCACAGGGAGAGACCAGTTGGCCCCCCTTT
GGAAGTGGAAGTTCCTTTCCGCCTTCCTCCAGGTGATCCCGAAAAGATGAACATGATAAAAGTTTCCAGTATCATGGGCATTGATC
CAAAGCCATTTGATGCCAAGACATTTGTTGAAGAAGACACATTTGAGAGAGATGGAACGAAGACGCGTATTCGTCTGGTTAATAAT
ATTGTGCGCCATAGGTTTGTTAAGGGTCGAGACGGTAAAACATATAGTGAAAGTAATGCTCGGTTTGTGAGGTGGTCTGATGGAAG
CTTACAGCTATTGATAGGAAACGAAGTTCTTGATATAACTGAACAAGATGCACGACAAGACCAGAACCACCTTTTACTGAAACATG
AAAAGGGAATCCTTCAATCGCAAGGAAGAATTTTGAAGAAAATGAGGTTTATTCCATCATCTCTAACGTCAAATTCACATAGGCTT
TTGACAGCCCTTGTTGACTCGAGGGAAAAGAAGGAGTTCAAAGTTAAGAACTGTGTCACTGACATTGACCCTGAGAGGGAGAAGGA
GAAGAGAGAAAGGATGGAAAGCCAAAACCTCAAGGCTAGTACAAAGCTGAGTCAAGCGAGGGAGAAAATCAAGCGCAAGTATCCAC
TTCCTGTTGCAAGGAGACAACTCTCCACTGGATACTTGGAAGATGCTCTCGAAGAGGACGAAGAGACAGACCACTATGGTTCTCAC
CGCTCAAACCGTGGCTATGAGGAGGATCTGGAAGCTGAGGCGCAACGGGAACGACGAATTATGAACGCCAAGAAGAGCCAGAAAGG
CTTTCCGGGGAGGTCATCAATGAGTTCAGCGAGACCGACAAGGCGTCAAGCGGAGTATTCAGAGAGCGAGAGAGAGGAATCAGAGT
ATGAGACTGAAGAAGAAGAGGAAGAAGAGGAGGAAAGGCCACGTTCCCGTAAAAGAGTCAAGGAACCAGAAGATGAGTACGAGGAA
GATGAGGAGGAAGAAGAAGAAGGAAAAACCAACAGATATTCAGAAGAAGATGAAGAAGAAGAAGAGGGAGTTAAGGCAGGGAAGGA
ACGTGGTAGTAGCCGGAAAAGGAAAGGGATTGAGTCGGACGAGGAGGAGGAGTCTCCTCCGAGAAAAGCTCCGACTCATCGTCGTA
TGGCCATGGTTTACGACAGTGATGAAGACTAACAATTTTTCCATAAACAAAGCACTATCCCGTTTCATCGAAATAAAAAAAATTGT
AATGTCAGTGTTTTGAACTTGTCTCGTTTTAATTAAATAGAAAACGATCATCAGATCATGATATGGATTTTTTGATCATTTTGTTT
CATGTAATTTGTAGTTGAAGACAGTGTTCATTTTTCTTATTGGCAACTCTCTAAAGGTTGGTGAGATTAAGAAGACAACAAAAATT
CTGAACATTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200923 leo1-like family protein [Arabidopsis thaliana] | 1932 | 5e-214 |
| NP_851237 leo1-like family protein [Arabidopsis thaliana] | 1914 | 6e-212 |
| AAM81969 VERNALIZATION INDEPENDENCE 4 [Arabidopsis thaliana] | 1866 | 2e-206 |
| XP_002866420 hypothetical protein ARALYDRAFT_358320 [Arabidopsis lyrata subsp. lyrata] | 1840 | 2e-203 |
| BAH19414 AT5G61150 [Arabidopsis thaliana] | 1615 | 3e-177 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q94546 Another transcription unit protein | 258 | 3e-021 |
| Q01042 Immediate-early protein | 176 | 8e-012 |
| Q7M732 Retrotransposon-like protein 1 | 173 | 2e-011 |
| P13816 Glutamic acid-rich protein | 172 | 2e-011 |
| Q54F38 Histone H3.v1 | 166 | 1e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3E7F7 Putative uncharacterized protein At5g61150.2 | 1932 | 3e-214 |
| Q9FNQ0 At5g61156 | 1925 | 2e-213 |
| Q8L5W5 VERNALIZATION INDEPENDENCE 4 | 1877 | 8e-208 |
| B9DF97 AT5G61150 protein (Fragment) | 1615 | 2e-177 |
| B9RLP8 RNA polymerase-associated protein LEO1, putative | 1366 | 1e-148 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G61150.2 VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding | 1939 | 3e-217 |
| AT5G61150.1 VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding | 1926 | 8e-216 |
| AT5G03710.1 unknown protein | 165 | 1e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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