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Information for unigene UN19512

FASTA Sequence
Unigene ID: UN19512Length: 1441  SNP
CGAGCAATATTGTGTTCACCAACAAAAGAAAAAAAAACTCAAACTCAAACAATTTCGTGTAAGAGACCAGAACTGAAACCATCAAA
GGAGACATTATTCACGGTTGAAGGTCTAAATTCGAGAGGAACATTCCAATCATTCAGATTATCATCTGACCATTTCAAGTCAACAT
TCTCAACGCTGAACCCATTCACGTGTTCCATAGTGATCCCAGCTGTGGCGCTATGGTTCATTAGACCTTGACATCCAGGTCTATAA
TCCACAAGCCCTGAAGTGTAATTACTCCATCTTCTCAAAGTAATGTTCATGTTCTTGAACTTTATGTCGGTGAGTAATCCGTTTGG
AGAGCCAGATAAAAAGACTCCGTTTTCAGAAACGATTGTTATGTTTACGAAAAGGAGACTCGAGATTGAGCCTTCCGTTGAAGATG
AATTGCGCGGGCAAGTTGTTATATATATTGGTTCTGCTCTTCCCCACCAGGACGGATCGTAGTATCTTGTACTGATGTTCATGTTT
GAAAATGTAATGCCATTCACATTTCCTCCATCACGTATTTGCATGCCAAGGCCTCTGTGAGATTCAAAAATGGTGATGTTATCAAA
GACAAGACCTTTGAATTCAAACCAGCTCGCACTACCAAGTTTAATGGCGGAGGATTTGGTCCGGATCCAGCAGTCTGTAACGGTTA
AGTTGTAAAGCGGAGCAGCATATGTCTTGGGACAGATTGCGTCATCTCCTGTGTCGATGTGACACCGAGTTATGAAAGTATTGTTT
GAATCTTCTATGTCGATGCCATCGTTATTTGGTGTGTTGAAATCGCCAAAGATCGATACATCGTGGATTGAAGTGTTCTCGCACCT
CACGATATGCAAACACCAATACGCAGGCTCACGTAGAGTGATGTTCCAGATTTGAACATTGGTGGAGTCAACGAATCCAACAAGCC
TAGGTCTACACTCATCACCCAAACAAGCCCCGGTTTGATTCCAGCTCACCATCACGTTCTTCCTCTCATCGAACCTCACCACGAAT
TTCGATCCCTGTCCGTCGATTGCTCCTCCGCCGGTGATTCCGACATCCGTCGCGTTGTTCGCCACCACCACGTACCACTCTGACGA
AGTCTCCCCCGGATAATCTTCGATCCTCGGTCCACCGAGAAGTACGGCGTTCTCCGTCACATCGAGGAGGACGCCGGATCGGAGAT
GGAGCTTGGCGGTCAAATAGGTGCCGGGAGGAAACGTGACGTGGCAGATGGAGGAAGATGAGATGTATTGATGATTGCAGGCGTTT
ATGGCGGACTGTATCGCGGAGGTGTCGTAGTGGATACCATCGCCGGTGGCGCCGAAGTCGGTGACGGAGAGGACCAAGGAATCGCC
GGGAAGTTGGATCTTCTGTGATGACGTGTACAAACGTGATGGACGACGGATAATACAGGAACAAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878172 hypothetical protein ARALYDRAFT_324272 [Arabidopsis lyrata subsp. lyrata]21466e-239
NP_567055 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]21341e-237
CAB41176 putative protein [Arabidopsis thaliana]21261e-236
XP_002322693 predicted protein [Populus trichocarpa]17731e-195
XP_002282920 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]16223e-178

Swiss-Prot top hits (Blast detail)Scoree value
P15922 Exo-poly-alpha-D-galacturonosidase1605e-010
Q9FY19 Polygalacturonase1561e-009
Q7M1E7 Polygalacturonase1453e-008
Q8CYC9 Plasmin and fibronectin-binding protein A1372e-007
P43212 Polygalacturonase1292e-006

TrEMBL top hits (Blast detail)Scoree value
Q9SVZ3 Putative uncharacterized protein F15B8.2021269e-237
B9II39 Predicted protein (Fragment)17737e-196
B6T994 Polygalacturonase14852e-162
C5X3W3 Putative uncharacterized protein Sb02g02828014852e-162
B8BCV9 Putative uncharacterized protein14807e-162

Arabidopsis top hits (Blast detail)Scoree value
AT3G57790.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein21345e-240
AT4G23820.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein3146e-029
AT3G62110.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein2277e-019
AT5G41870.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein2261e-018
AT3G48950.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein2081e-016

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  25%
 
102  25%
 
91  13%
 
181  13%
 
212  25%

Unigene MembersMember information