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Information for unigene UN19554

FASTA Sequence
Unigene ID: UN19554Length: 1427 SSRSNP
CCAGAGAGAGAGAGAGAGAGAGAAGTCAGAGACGCAACACCGAAAGAGAGAAAGAGAACAAATTCTCTCTTTCCCTTTTCCCATTT
TAGTTTCAATCTTTCCCGCTCACTGTTTCTTCCTCACATCACATCTCTCTCTTCTCCGTCGTTAACCACCAGTATACAGAGAGGCT
GGAGCTGGGGAAGAAGAAAAGGATTGTTTATGGAGGGAGAAGGCGTAAAAGGTTTGGGATGCCAGAAGACTATGGATGGGAATGCG
AGTAATGGGAATGGTCTGGAGAAGACTGTTGTACCTTCTTGTTGCCTCAAGGCTATCTCTTGCTTACCTGAGCAAGATGCTAAGTG
CCACTCCACTGTTGTCTCTGGATGGTTCTCCGAACCTCCTCACCCTCGCTCTGGGAAAAGAGGCAAATCAGTGTATTTTAACAACC
CTATGTGGCCTGGAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTATTCAAAGACAAGTCAGATTATCAGGAAGTCCTGGTGTTT
GAGTCAGCTACGTATGGGAAAGTGCTTGTTCTAGATGGTATTCTACAGCTGACTGAAAAAGATGAATTTGCATATCAGGAGATGAT
AGCCCATCTACCTTTATGCTCTACACCTTCACCTAGAAATGTTCTGGTTGTTGGTGGAGGTGATGGTGGTGTTCTCAGGGAGATTT
CTCGCCATAGCTCTGTTGAGGTTATTGACATTTGTGAGATAGACAAGATGGTCATAGATGTGTCTAAGAAGTTCTTCCCCGAGTTA
GCGGTTGGATTTGAGGATCCTCGTGTTCATCTTCACATTGGTGATGCTGTTGAGTTCCTTCGTAAATCCCCTGAAGGGAAGTATGA
TGCCATTATTGTGGATTCTTCAGACCCTGTTGGTCCTGCTCAGGCGCTTGTTGAGAAGCCTTTCTTTGAGACGTATAGCTAGAGCG
TTGAAGCCTGGAGGAGTTCTTTGCAACATGGCGGAAAGTATGTGGCTCCACACTCATCTCATTGAAGACATGATCTCGATTTGCCG
CCAAACATTCAAAAACGTTCAGTATGCGTGGAGCAGCGTCCCAACATACCCAAGCGGCGTGATTGGTTTTATCTTGTGCTCTACGG
GCGGTCCCGCTGTTGATTTCAAGAACCCTATTAACCCTATTGAGAAACTAGACGGTGCCATGACCTATAAGCGAGAAATGAAGTTT
TATAACTCGGATATGCACAGAGCAGCTTTCGCTTTGCCTACTTTCCTTAGAAGAGAAGTGGCTTCACTTCTGTCTTCTTCTTCTTG
ACTTCTGTTTGTCTTAAACATTTTAATATTAAACCTCTGTAAAAGAGGAAATAATTGCATCATAGGAGGCTTTGTATCACTAAGCT
CACTCCTTTAATATTTAAAGACTTCTATTTTTATATATTGGCACTATATAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568785 Spermine synthase [Arabidopsis thaliana]11162e-119
BAH19534 AT5G53120 [Arabidopsis thaliana]11125e-119
XP_002864224 hypothetical protein ARALYDRAFT_495379 [Arabidopsis lyrata subsp. lyrata]11125e-119
AAL11565 AT5g53120/MFH8_5 [Arabidopsis thaliana]11116e-119
AAM64782 spermidine synthase [Arabidopsis thaliana]10759e-115

Swiss-Prot top hits (Blast detail)Scoree value
O82147 Spermidine synthase7304e-076
Q9ZTR1 Spermidine synthase 17251e-075
Q9SMB1 Spermidine synthase 17242e-075
O48659 Spermidine synthase 27242e-075
Q96557 Spermidine synthase 27223e-075

TrEMBL top hits (Blast detail)Scoree value
Q94BN2 Putative spermidine synthase11161e-119
B9DFL7 AT5G53120 protein11123e-119
Q944S0 AT5g53120/MFH8_511114e-119
Q8LBG3 Spermidine synthase10756e-115
A2VC29 Spermine synthase10093e-107

Arabidopsis top hits (Blast detail)Scoree value
AT5G53120.1 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase11212e-122
AT5G53120.2 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase11212e-122
AT5G53120.3 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase11212e-122
AT5G53120.4 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase11212e-122
AT5G53120.5 SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase11212e-122

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
212  20%
 
122  20%
 
73  30%
 
112  20%
 
201  10%

Unigene MembersMember information