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Information for unigene UN19561

FASTA Sequence
Unigene ID: UN19561Length: 1831  SNP
GGGACTCTCAACTGCAACAAAACACTCTCGTTTAGACAGAGAAAGTGAGAAACAAAACCCACAAAAAAACATGATAATGAGAAAAG
CTCTAAGGCTAAGAAGCATCACGATGATGGTGTTAATGGCGGTTTTGGTCTGGTCTGTAACTCTAGAGACCTGCATTGCTAGAAGA
GGAAGACATTGGAGACATAACCACCGAAGCTCCTCTGACTTGTCTGATTCCTTGTCAAGCAAGAAACCGAAAAGCCATGGGAACAG
TCACCGCAGCTCTCACAATAACAACAACAATCATCACAACAAGTCTAAACCTAAACCGAAGCCGAAGCAGAAAACGCCGCCAAAAG
CTGACGACAATAACTCACCAGTGGTTTCACAACCACCACAAGTCCAACCACCGTCTCTTCCGCCGCTAAAGGGATCTCAGGTCTTC
AATGTAATGGATTTTGGAGCAAAGGGTGATGGCAAATGTGATGACACTAAGGCGTTTGAAGCGGCCTGGGCAGCGGCTTGTAAAGT
AGAGGCGTCGATGATGACTGTACCGCCTGGATACACTTTTCTTATTGGTCCAATCGCATTCTCCGGTCCTTATTGTCAATCTAACA
TTGTGTTCCAGCTTGATGGTACGATTATAGCTCCAACGGATTCAAAATCATGGGGAAAAGGGTTATTGTGGTGGATTGAGTTCACA
AAGCTGAAAGGTATTAAAGTGCAAGGGAAAGGTGTGATTGATGGAAGAGGCTCTGGTTGGTGGCAACAAGACTACCCTTTCACTGA
TGGTGAAACCGAACTCATTGTTCCCTTGAACAATTCTGTTCACCAAAACCCTCCATTGCCGGTAAGAAGTGAGCTTGATTGGAAAA
TGCCAAGCATCAAACCAACGGCACTGCGATTCTATGGGAGCATTGGCGTGGAAGTGTCTGGTATAACGATCCAAAACAGTCCTCAA
TGTCACCTCAAATTCGATAACTGCATCGACGTTGAGGTACATGACATGTCCGTTTCTTCACCCGGAGACAGTCCAAACACCGATGG
GATTCACCTTCAGAACTCCAGAGATGTCCTCATTCACAGCACAACACTCGCTTGCGGAGATGATTGTATCTCCATCCAAACAGGTT
GCTCGAATGTATTCGTACACAACGTGAACTGTGGACCAGGTCACGGTATCAGCATCGGTAGTCTCGGTAAAGACAGCACAAAAGCC
TGTGTCTCGAACATAACAGTGAGAGATGTGGCGATGCACAACACGATGACAGGGGTCCGGATCAAGACATGGCAAGGAGGAGTAGG
ATCAGTGAAAGGGATACTCTTCTCAAACATTCAACTCAATGAGGTCCAGCTTCCAATAGTCATAGACCAGTTCTACTGTGACCACA
GCAAATGTAAGAACCAGACATCAGCAGTTGCGGTGGAAGGAGTGACTTACGAGAGGATCAAAGGCACTTATACCGTGAAACCGGTT
CATTTCGCTTGCAGCGATAACTTCCCTTGCGTAGATGTGCAGCTATCTGCGATCGAGCTTAAGCCGGTTCAAGAAAAGTATCATAT
GTCTGATCCTTTTTGCTGGCAGACGTTTGGTGAGCTCAGCACTCCTACTCTTCCTCCTATTGATTGTTTACAGATTGGGAAGCCTC
CGAGAAACAGAGTACAGTCTGATCATGATGTATGTTGATGGATCTTGGAAGTTGTGTGAAACATGTAGATGAATGAATGTATATCT
TGTCTAAAAGCCTCTATTACCACTGCTTCATACCAATTACAGTTTAGTTTAAATTGATGTCTTTTCCCTATACTTTTATTGCTATT
TAAATGCCTCACTTTATTGATCAGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_563875 Pectin lyase-like protein [Arabidopsis thaliana]25751e-288
XP_002886607 hypothetical protein ARALYDRAFT_893483 [Arabidopsis lyrata subsp. lyrata]22499e-251
NP_564758 Pectin lyase-like protein [Arabidopsis thaliana]22077e-246
AAL31197 At1g60590/F8A5_12 [Arabidopsis thaliana]20096e-223
ABK95830 unknown [Populus trichocarpa]19594e-217

Swiss-Prot top hits (Blast detail)Scoree value
Q949Z1 Polygalacturonase At1g481007441e-077
Q94AJ5 Probable polygalacturonase At1g801705495e-055
Q8RY29 Polygalacturonase ADPG25461e-054
P35336 Polygalacturonase5371e-053
P43212 Polygalacturonase5325e-053

TrEMBL top hits (Blast detail)Scoree value
O22699 Putative polygalacturonase22075e-246
Q8W4S2 At1g60590/F8A5_1220094e-223
A9PHH7 Putative uncharacterized protein19593e-217
B9SH92 Polygalacturonase, putative19011e-210
B9HLT0 Predicted protein18714e-207

Arabidopsis top hits (Blast detail)Scoree value
AT1G10640.1 polygalacturonase25811e-291
AT1G60590.1 polygalacturonase, putative / pectinase, putative22191e-249
AT5G14650.1 polygalacturonase, putative / pectinase, putative10154e-110
AT3G26610.1 polygalacturonase, putative / pectinase, putative8022e-085
AT1G48100.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein7441e-078

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
114  31%
 
125  38%
 
81  8%
 
62  15%
 
101  8%

Unigene MembersMember information