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Information for unigene UN19561
| FASTA Sequence |
| Unigene ID: UN19561 | Length: 1831 |
| SNP | GGGACTCTCAACTGCAACAAAACACTCTCGTTTAGACAGAGAAAGTGAGAAACAAAACCCACAAAAAAACATGATAATGAGAAAAG
CTCTAAGGCTAAGAAGCATCACGATGATGGTGTTAATGGCGGTTTTGGTCTGGTCTGTAACTCTAGAGACCTGCATTGCTAGAAGA
GGAAGACATTGGAGACATAACCACCGAAGCTCCTCTGACTTGTCTGATTCCTTGTCAAGCAAGAAACCGAAAAGCCATGGGAACAG
TCACCGCAGCTCTCACAATAACAACAACAATCATCACAACAAGTCTAAACCTAAACCGAAGCCGAAGCAGAAAACGCCGCCAAAAG
CTGACGACAATAACTCACCAGTGGTTTCACAACCACCACAAGTCCAACCACCGTCTCTTCCGCCGCTAAAGGGATCTCAGGTCTTC
AATGTAATGGATTTTGGAGCAAAGGGTGATGGCAAATGTGATGACACTAAGGCGTTTGAAGCGGCCTGGGCAGCGGCTTGTAAAGT
AGAGGCGTCGATGATGACTGTACCGCCTGGATACACTTTTCTTATTGGTCCAATCGCATTCTCCGGTCCTTATTGTCAATCTAACA
TTGTGTTCCAGCTTGATGGTACGATTATAGCTCCAACGGATTCAAAATCATGGGGAAAAGGGTTATTGTGGTGGATTGAGTTCACA
AAGCTGAAAGGTATTAAAGTGCAAGGGAAAGGTGTGATTGATGGAAGAGGCTCTGGTTGGTGGCAACAAGACTACCCTTTCACTGA
TGGTGAAACCGAACTCATTGTTCCCTTGAACAATTCTGTTCACCAAAACCCTCCATTGCCGGTAAGAAGTGAGCTTGATTGGAAAA
TGCCAAGCATCAAACCAACGGCACTGCGATTCTATGGGAGCATTGGCGTGGAAGTGTCTGGTATAACGATCCAAAACAGTCCTCAA
TGTCACCTCAAATTCGATAACTGCATCGACGTTGAGGTACATGACATGTCCGTTTCTTCACCCGGAGACAGTCCAAACACCGATGG
GATTCACCTTCAGAACTCCAGAGATGTCCTCATTCACAGCACAACACTCGCTTGCGGAGATGATTGTATCTCCATCCAAACAGGTT
GCTCGAATGTATTCGTACACAACGTGAACTGTGGACCAGGTCACGGTATCAGCATCGGTAGTCTCGGTAAAGACAGCACAAAAGCC
TGTGTCTCGAACATAACAGTGAGAGATGTGGCGATGCACAACACGATGACAGGGGTCCGGATCAAGACATGGCAAGGAGGAGTAGG
ATCAGTGAAAGGGATACTCTTCTCAAACATTCAACTCAATGAGGTCCAGCTTCCAATAGTCATAGACCAGTTCTACTGTGACCACA
GCAAATGTAAGAACCAGACATCAGCAGTTGCGGTGGAAGGAGTGACTTACGAGAGGATCAAAGGCACTTATACCGTGAAACCGGTT
CATTTCGCTTGCAGCGATAACTTCCCTTGCGTAGATGTGCAGCTATCTGCGATCGAGCTTAAGCCGGTTCAAGAAAAGTATCATAT
GTCTGATCCTTTTTGCTGGCAGACGTTTGGTGAGCTCAGCACTCCTACTCTTCCTCCTATTGATTGTTTACAGATTGGGAAGCCTC
CGAGAAACAGAGTACAGTCTGATCATGATGTATGTTGATGGATCTTGGAAGTTGTGTGAAACATGTAGATGAATGAATGTATATCT
TGTCTAAAAGCCTCTATTACCACTGCTTCATACCAATTACAGTTTAGTTTAAATTGATGTCTTTTCCCTATACTTTTATTGCTATT
TAAATGCCTCACTTTATTGATCAGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_563875 Pectin lyase-like protein [Arabidopsis thaliana] | 2575 | 1e-288 |
| XP_002886607 hypothetical protein ARALYDRAFT_893483 [Arabidopsis lyrata subsp. lyrata] | 2249 | 9e-251 |
| NP_564758 Pectin lyase-like protein [Arabidopsis thaliana] | 2207 | 7e-246 |
| AAL31197 At1g60590/F8A5_12 [Arabidopsis thaliana] | 2009 | 6e-223 |
| ABK95830 unknown [Populus trichocarpa] | 1959 | 4e-217 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q949Z1 Polygalacturonase At1g48100 | 744 | 1e-077 |
| Q94AJ5 Probable polygalacturonase At1g80170 | 549 | 5e-055 |
| Q8RY29 Polygalacturonase ADPG2 | 546 | 1e-054 |
| P35336 Polygalacturonase | 537 | 1e-053 |
| P43212 Polygalacturonase | 532 | 5e-053 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22699 Putative polygalacturonase | 2207 | 5e-246 |
| Q8W4S2 At1g60590/F8A5_12 | 2009 | 4e-223 |
| A9PHH7 Putative uncharacterized protein | 1959 | 3e-217 |
| B9SH92 Polygalacturonase, putative | 1901 | 1e-210 |
| B9HLT0 Predicted protein | 1871 | 4e-207 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G10640.1 polygalacturonase | 2581 | 1e-291 |
| AT1G60590.1 polygalacturonase, putative / pectinase, putative | 2219 | 1e-249 |
| AT5G14650.1 polygalacturonase, putative / pectinase, putative | 1015 | 4e-110 |
| AT3G26610.1 polygalacturonase, putative / pectinase, putative | 802 | 2e-085 |
| AT1G48100.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | 744 | 1e-078 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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