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Information for unigene UN19562
| FASTA Sequence |
| Unigene ID: UN19562 | Length: 913 |
SSR | | GGAAGGCCCTGAATAATTTCTCCTCCTCCTACACAGAGAGACAGATCGTATCCATTGCCAATAAGCGAGCGAGAGAAAGAGAGAGA
GAGAGAGAGAGAGAGAGATAGAATGTCTGGAATGGTAGATGCGAGCTCGTGGGGAGCAGCGTTGGTAAGGATCTCGCCGTACACTT
TCTCCGCAATCGGAATCGCCATCTCGATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACCGGAAGTAGTTTGATC
GGTGCGGCCATTGAAGCTCCTCGTATCACTTCAAAGAATCTCATCAGTGTAATCTTTTGCGAAGCTGTAGCTATATATGGCGTTAT
TGTTGCAATCATTCTGCAGACGAAGTTGGAGAGTGTCCCATCATCAAAGATGTATGACGCCGAGTCTCTTAGAGCTGGATATGCAA
TCTTCGCTTCTGGAATCATTGTTGGATTCGCCAACCTTGTATGCGGGTTATGTGTAGGAATCATTGGAAGCAGTTGCGCATTGTCA
GATGCTCAGAACTCCACACTGTTTGTGAAGATTCTTGTGATTGAGATCTTCGGAAGCGCTCTCGGGTTGTTTGGAGTTATTGTTGG
GATCATTATGTCCGCACAAGCTACATGGCCGACCAAATAGAGAGCATACAACCGTGTCTGAAACTCTGGAAAGAAGATGGTTTCTT
GATTATCTTCATTGTTATATGGATACTTTCATGTCTAGAGAAAAAACCAGTGTAAGAACTGAGAACTTCTTTGTATCCCTGATTTT
TTTTTAATACTTTGTAATAAGTCTCTTTGGAGAACCTCTTCTTGTTTGTATTCTCTTTTAATCAAAGACAAGAGTTTGTATATACT
GTATGACTCTTTTTGGAATTGAAAGTTCTATTCAGTTAATATGCTTCTTCTCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_180132 V-type H+-transporting ATPase 21kDa proteolipid subunit [Arabidopsis thaliana] | 843 | 4e-088 |
| XP_002880688 H+-transporting two-sector ATPase [Arabidopsis lyrata subsp. lyrata] | 843 | 4e-088 |
| NP_194979 ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana] | 842 | 5e-088 |
| AAR26002 V-ATPase subunit c'' proteolipid [Xerophyta viscosa] | 789 | 7e-082 |
| NP_001152133 LOC100285771 [Zea mays] | 787 | 1e-081 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P23968 V-type proton ATPase subunit c'' | 511 | 5e-051 |
| Q2TA24 V-type proton ATPase 21 kDa proteolipid subunit | 482 | 1e-047 |
| Q99437 V-type proton ATPase 21 kDa proteolipid subunit | 482 | 1e-047 |
| Q91V37 V-type proton ATPase 21 kDa proteolipid subunit | 482 | 1e-047 |
| O14046 Probable V-type proton ATPase 20 kDa proteolipid subunit | 476 | 6e-047 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q9SLA2 At2g25610 | 843 | 3e-088 |
| Q9SZY7 H+-transporting ATPase-like protein | 842 | 3e-088 |
| Q6S9B3 V-ATPase subunit c'' proteolipid | 789 | 5e-082 |
| B4FZS8 Putative uncharacterized protein | 787 | 8e-082 |
| C6T3I8 Putative uncharacterized protein | 783 | 2e-081 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G25610.1 H+-transporting two-sector ATPase, C subunit family protein | 844 | 1e-090 |
| AT4G32530.1 vacuolar ATP synthase, putative / V-ATPase, putative | 843 | 2e-090 |
| AT4G32530.2 vacuolar ATP synthase, putative / V-ATPase, putative | 575 | 2e-059 |
| AT1G75630.1 AVA-P4; ATPase | 249 | 1e-021 |
| AT1G19910.1 AVA-P2; ATPase/ proton-transporting ATPase, rotational mechanism | 249 | 1e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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