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Information for unigene UN19587

FASTA Sequence
Unigene ID: UN19587Length: 2884 SSR 
GGGAGACCACACCAGTGTAGAGAGAAAGAGAGAGAGAGACTCTTGATTGACTCAACAACAGCTCTGACGATGAATTCGTAAAGGGT
GATTAGCGGATCTCGAGAGAGAGACAAATCCCTAATCTCCAGTTTCTCAATCGCCCATCTTCATTTCTCCTGTGCGCGCGGCGAGT
TGTCATCGTGCAATCATGTTTTGGCTCCCTGTAGAATCCGATCCTGGTGTTTTCACGGAGATTATACAACAAATGCAAGTGAAAGG
TGTGCAGGTTGAAGAATTGTACTCCTTGGACATTACTTCTCTTGATGAAATAAGACCTGTATACGGATTGGTATTGCTTTACAAGT
GGCGTCCTGAGGAAAAAGAGTCTCGTGTTGTGATCACTGAACCAAACCCTAACTTTTTTTTCGCCAGCCAGATAATCAACAGTGCT
TGTGCTACACAAGCGTTACTGTCTGTCCTCATGAACTCTTCGAGTATCGAGCTTGGTTCTGAACTAACAGAACTTAAAGATTTCGC
TAAAGACTTCCCCCCTGAACTCAAAGGCTTAGCCATCAGCAACAACGAGGCCATACGTGCAGCCCACAACACGTTCGCTAGGCCTG
ACTCATCTTCCACCACCACGGAAGAGGATGAGATAGCTGCTCGGAGGAAGAAAAAGGAAGAGGAAGATGACGATGTGTATCACTAC
ATCAGCTACTTACCTGTTGATGGTATCTTATACGAGCTTGATGGTCTTAAAGAAGGACCCATTAGCCTTGGACAGTGTCTCGGTGA
GCCAGACGGAATCGAATGGCTCAAAATGGTCCAACCTGTGGTGCAAGAGCGGATTGATCGGTATATGCAGAACGAGATCCGGTTTA
GTCTCTTGGCTGTGGTTAAGAACAGGAAAGAGATGTATCGAGCTGAGCTGAAAGAGTATCAGATGAAGCGGGAGAGGATTTTGCAG
CAGGTGGGAACTCTGCAAGCTGATAAGTACGCTGAGAAGAGCAGCTACGAGGCTCTGGATAAGTCTCTTTCTGAAGTCAATGTCGG
GATCGAGACAGTGTCGCAGAAGATTGTAATGGAGGAAGAGAGGTCCAAGAACTGGAAGAAAGAGAACTTGAGGAGGAAACATAACT
ATGTCCTGTTCCTCTTCAACTTCCTCAAGATTCTTGCGGATAAGAAGAAGCTGAAGCCTCTTATTGACAAGGCTAGACGTTAACAC
CTGATTCAGCTTATGCCAAGGATATTAAAACTTATATGTATGAGGTCTGATTGTATTCAGTCTTGAGGATTTTTGTAGAACCAAAT
CTCTTAATTACATGAAACAATAAATCAAACACAATTACAAAACTTGTTCTCTTCGTTTTATGTAAAAACTTCTATATAGTGGCAGA
TATCTCAGCTGCTGCAATCATCATCATCATCACTCGTACCTGGTGGTTGTGAAAGAAGAGAGTAAACCGGCTGCTTGAGCCGGTAT
TATATCTCCAAATGTCGACATAGCGGCTGCTGATCTATCCTTGAATATTCCCACTTGTCCGTCACTTAGTATTGAGCCAAATCCAC
TACCAGCCTGCATGAAAGACTTTAAGAACGGGGAAGCCACGCCGAAACTGGAGTCGTCGTCCAAATCATTTGTTTGAGAATGCTCG
CCATTTGTAAATGCATTCCATGAGTTTCTTGACGAACTTTCATTTGATGTAACTGGAATGGAGACCTTGTTTGTACTTCTCGAGGA
CAGAGCCGGAGCGCTTATGGGAAGGTATTTGAAGCGGGGTACTGTGGAGCATGGCATGATATTTGACTCTGAATTACTTGGCAGTT
TCTGTGAAGTATCTGTGTACATGCGGTTTAGTTGCACAAAGAATCCAAATAGTACTGCGTGGCGTAGGTATGACTGCTTTTCGTTC
TCCCAAAGATAAGGCTCGTACGTGAGCCAGTCTATGGGATCCAACTTTTGGGTCAGTTGTGAGATCACTCCATCAATGCGACCTCG
GTTGACTGACTTTGTTTGCTGTTGGCCCTGCTTTCTCCTGAACGCTGATCTGTTCATTGTGATCTTTGGTTGGATCTCCACATTGG
TGCTTGTATCACCCCCAGAAAGAACGTCCGATGCAAATCTCAAATCCAGCAAAATTTGTAAAACTCCTTTCTCTGAAATTTGGGGT
TCGTCGGCCTCCCTGGCAGATAAGAAATCCTCATAAATAATGATGATCTTCTCCAACAGGCTTGAAGAAAACTTTTGCAAAATTGA
CTTATCCAGTACATGGCCTCCAATTCGATGAATTTCTTCTGATGCCCGACAGAGAAATGAAATTATATAGAGCGAAGGCAAGGACG
GAAGTGATATCTTCAACTCACTCTCGCCCTGCTCTTCCTTGACTATTGTCTCTTCCCAACCCCTTAAAGGAGTTGTAGCAGAGAGT
CCATCGTCAATCCTAAGATCACGCAAGAGAATAGCGGAGAGCTCATCCGAGAGCCACTGTATCCACAATGTATGAGCCTTAATGCA
CAGATCTCGCATAGTTTTATTAAGTTCTTCAAATTTCGGACTTGTCTTCTCATCTGCCTTGAGTAGTGCCGCAACAGCTAACGAAC
TCTGCTTCCTAGGATCGGTATGCAACAGCTTTCCAGGGCTGTCAGGAGTGCCTGCAGTATTCGAGCTAAATCTTGGTTGCCTCAAC
AAGGATGACAATTTATCAGAAACTGCATTCATAGTTTCTCTACACCACAATCTTGGTGAACCGAGAATCAAGGGAACGTGTTTCGA
GTGGTTCAACAATGCAAACAAAAGGCGTCCCATAAAAAGAGATTTCTCAATTATTATAGCAGGTGGAATTGCTTCGCTGTCATTAT
TCCCTTTCTTCATGGCAGCATAGAGAAATTCGAGTTCCTTATCTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197134 Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]21353e-237
XP_002871714 hypothetical protein ARALYDRAFT_488483 [Arabidopsis lyrata subsp. lyrata]21335e-237
NP_001031890 Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]19562e-216
NP_974788 Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]18315e-202
XP_002311274 predicted protein [Populus trichocarpa]16811e-184

Swiss-Prot top hits (Blast detail)Scoree value
Q54N38 Ubiquitin carboxyl-terminal hydrolase isozyme L57282e-075
Q06AT3 Ubiquitin carboxyl-terminal hydrolase isozyme L55605e-056
Q9XSJ0 Ubiquitin carboxyl-terminal hydrolase isozyme L55596e-056
Q9Y5K5 Ubiquitin carboxyl-terminal hydrolase isozyme L55596e-056
Q9UUB6 Ubiquitin carboxyl-terminal hydrolase 25112e-050

TrEMBL top hits (Blast detail)Scoree value
Q9FFF3 Low density lipoprotein B-like protein21352e-237
Q2V372 Putative uncharacterized protein At5g16300.319561e-216
Q3E9H0 Putative uncharacterized protein At5g16300.218313e-202
B9HI08 Predicted protein16818e-185
B9RLZ8 Putative uncharacterized protein16566e-182

Arabidopsis top hits (Blast detail)Scoree value
AT5G16300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 204 Blast hits to 183 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 34; Plants - 24; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).21393e-240
AT5G16300.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 201 Blast hits to 182 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 34; Plants - 23; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).19565e-219
AT5G16300.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); Has 199 Blast hits to 182 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 34; Plants - 24; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).18312e-204
AT5G16310.1 UCH1; ubiquitin thiolesterase14942e-165
AT1G65650.1 UCH2; ubiquitin thiolesterase/ ubiquitin-specific protease6232e-064

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  33%
 
103  33%
 
121  11%
 
61  11%
 
91  11%

Unigene MembersMember information