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Information for unigene UN19590
| FASTA Sequence |
| Unigene ID: UN19590 | Length: 1147 |
| SNP | GAAACAAACATTTTATTTGAAATTTTATTCAAATTTTGAAGCATAAAGTACATAAAAGGGTAAAATTCTACAAGACATGTCTATAT
AGATTGGTGGTTGGGTCAGAAAAAGATAAGATAAAATCATCACCACCTGACAAAAGTTACCAACACAAAGATGCATGTGAAGATCC
CACTTGCTGTCTACAACAACAACTAACTGAGGGTACTTCCGCCAATTCATACGATTCAAGATTCAAAAACAAGAGAACTTTCCATG
CCTTTTGGCATTGCTAGAGTTTGGACTTGTGAGTTGGAGCTTTACACTCGTGTATCAAGAGAGCGTCGTAGTGACCAAAACCATGG
TATAGGACCCGTATCGGATCTTCTTTACTGTATTCTTGACCGTATTCCGCTATGGTTATCAATCCTCCAGCCTTTTCGTCCTTCAT
ATACACTGTGATTGGCATCTGGAGGACGTGTGAAGCCATGAAGAGTTCAGGTTCACCTCCCCACACATGTGACTTCCGAATTTGAC
TCACGTATGTGTCAAAATCTCCTTCTATAAACCATTCTGTTTCTTGTCTTCTATTGATAAATTCGTCAGCAACTCTTGCACGTAAC
TCATCAGCGAGCTCTCTCTGTACCTTCTCACTTGGAGAAGGTTTACCAGAGCGTAAGCAAAACCCATGAGCCACTGAACGAAACAA
ACATCTACCATCTCCAGGTATACCAATGACAGAGTAATCTTTATAAACTCTCTTCCCATTGTTGCTGTGATCACCATCTTTACCCC
TCGAAGCATCTGCACACGTTGATTGAGGAGACGAAGAACAACAAACAAGCAAGCTGACAATCACACCTGTATAAGCAAATCTCGAA
CACCAATAAAGGTTTCTTCCAGACATTTTCGAGTCAGGGCTCAAGAAAGAAGCTTCGAGCTTTCCTTTAGGACCAGTTGATCGATT
AATCAATACCGACCAGCTACAAGGTTGTCTATTAGAGACAGATACACGTGAAGAAAGACTGTGAGTTCGGAACTTGTATGATCCTT
GAGAGAGGTGAGTGCCTAATTGCCTCTTGATGTAGATAACATTCCTAGAACATGTTGTGATTGGAGAATAACAACTCATCATCACT
TAATTGGCAAAATCCACTTCAGGAATTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567058 Cysteine proteinases-like protein [Arabidopsis thaliana] | 891 | 1e-093 |
| CAB67609 putative protein [Arabidopsis thaliana] | 795 | 2e-082 |
| NP_850716 Cysteine proteinases-like protein [Arabidopsis thaliana] | 744 | 2e-076 |
| XP_002876439 hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata] | 740 | 5e-076 |
| XP_002323302 predicted protein [Populus trichocarpa] | 712 | 8e-073 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q682S6 Putative uncharacterized protein At3g57810 | 891 | 1e-093 |
| Q9M2R6 Putative uncharacterized protein T10K17.20 | 795 | 1e-082 |
| Q8LBZ4 At3g57810 | 744 | 1e-076 |
| B9II34 Predicted protein | 712 | 6e-073 |
| B9T7Q4 Cysteine-type peptidase, putative | 711 | 7e-073 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G57810.2 OTU-like cysteine protease family protein | 1039 | 4e-113 |
| AT3G57810.3 OTU-like cysteine protease family protein | 1039 | 4e-113 |
| AT3G57810.1 OTU-like cysteine protease family protein | 920 | 2e-099 |
| AT2G38025.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: OTU-like cysteine protease family protein (TAIR:AT3G57810.3); Has 100 Blast hits to 100 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | 198 | 1e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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