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Information for unigene UN19597

FASTA Sequence
Unigene ID: UN19597Length: 1366  SNP
GGAAAAGAAGAAAAAAAAACAAAAAACACAAGAGGATGATGATGTCCGCCGCGTCGGCGGTAGAGCAGAAAAAGAAGAGGAGAAGG
GTTGAGTCTCCATCATCAAGTGGGTTAATGTCTTTGCCATATGACATGGTTCTAAACAGCTTGGCACGCGTGTCTAGATCTGACTA
CGGGGCTTTATCCGTGGTCTCAAAGAGCATCCGCTCGCTGGTGGCTTCGCCGGAGATGTACGAGACCCGATCTCGAATGGGTTTGA
GGGAGGAGTGCATCTACGTATGCTTGGGAACTAGTTTTGGCACAAAGCCTCTGGGATGGTTCATCCTCAGAAAAGGAGTACAAGGG
AATAACCGGCTGATCCCGATCCCGATCCCTTCGTTCCCATCTCCTCGCAGAGCTACCTATGTCTCCATGGGATGTGGGATCTATGT
AATTGGAGGAAGGATAGAAGCCGTGACGACATCGCGTGTCTCCTTCCTTGATTGTCGGACTCACACGTGGAGCCAGCTCCCCTCCA
TGAGATTTGCTCGCTGCGAAGCCAAGGCAGGCGTCTTAGACGGTAAGATATACGTTATGGGAGGCTGCGACGATGTATTCTCCGGC
GACAATCCAGAGGTTTTCGATCCAAAGACACAAACTTGGAGCAGTGTGTGTATACCTGATCCGGTGATGAACAAGGAGGTTTGCAA
GGTGGTTGGGCCGGATAATAATATTTCGTTCAAATTTTGGAGTGAAAAAGGTTTGTGGAATGATTTCTTTTTAAACCCAAGAGAGG
AGGATTGTTGTTGTGCAATAGACAGATTGTTATTTAGTTGTGATTTTGACGGGAGAATCAAGTGGTGTGACCCTTTGAGTGGGGTG
AGGAAAGGGAGCATGGAGTGGTACACGGTGAATGGTTTGGAAGATCTTCTAGGGTTTCTCAAGTTTGACCGTACCAACATAAATAC
AATCCTTTTCGTTGGGGAGAGTGCGGATGTGTGGAACTGCCATATGCTCAAGCGTGGTTACACAGACGGCCTCCTAGGCTTAGTTC
CGGGCTTCAAAATCAGCAAATCCGCTGGCAACATTGTCATCTTCTGGAGCGTGCTCGTCGGTGACAAGTTGCAGGTTTGGTGTGCT
GAGATTTCACTTGAGAGGCGGCTGCGCCAGGATGATGGCCAGATTTGGGGGATCATCCAGTGCATTGATCATGTCTTCACTATGGA
CCCTGACCTCTGTGTTTTGTCTTCTGTTAACGTTAGTCGTTGAACAATACTTTTTCTTTTAAATTTATTTGTTATCTGTCTCTCTT
TTATTTTTAATAAGATGTTTTCTCTTCTTCTATTTCATGATTCTTGTTAATGATGGTCAATTTGGGTTATAAACTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866962 hypothetical protein ARALYDRAFT_912622 [Arabidopsis lyrata subsp. lyrata]5141e-049
XP_002868960 hypothetical protein ARALYDRAFT_912541 [Arabidopsis lyrata subsp. lyrata]4881e-046
NP_195668 F-box/kelch-repeat protein [Arabidopsis thaliana]4378e-041
XP_002868917 kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata]4191e-038
NP_001119398 F-box/kelch-repeat protein [Arabidopsis thaliana]4135e-038

Swiss-Prot top hits (Blast detail)Scoree value
Q9SVA0 F-box/kelch-repeat protein At4g395804373e-042
Q9FI70 F-box/kelch-repeat protein At5g490004132e-039
Q67XN8 F-box/kelch-repeat protein At4g395604105e-039
Q9SV98 Putative F-box/kelch-repeat protein At4g396003782e-035
Q9LX87 Putative F-box/kelch-repeat protein At3g460503712e-034

TrEMBL top hits (Blast detail)Scoree value
A0MFD0 Putative uncharacterized protein (Fragment)4189e-039
Q6NL02 At5g395603542e-031
Q9FKA6 Emb|CAB79695.13542e-031
B9HFY5 Predicted protein3391e-029
Q4ABZ3 117M18_273391e-029

Arabidopsis top hits (Blast detail)Scoree value
AT4G39580.1 kelch repeat-containing F-box family protein4373e-043
AT5G49000.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 5235 Blast hits to 3308 proteins in 165 species: Archae - 10; Bacteria - 167; Metazoa - 4114; Fungi - 13; Plants - 659; Viruses - 110; Other Eukaryotes - 162 (source: NCBI BLink).4132e-040
AT4G39560.1 kelch repeat-containing F-box family protein4104e-040
AT4G39560.2 kelch repeat-containing F-box family protein4104e-040
AT4G39600.1 kelch repeat-containing F-box family protein3782e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
95  42%
 
62  17%
 
212  17%
 
112  17%
 
121  8%

Unigene MembersMember information