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Information for unigene UN19598

FASTA Sequence
Unigene ID: UN19598Length: 1636 SSR 
GGCTTGAGCCGTCGGAGAGATTCATTCACCTGCTGCAGACATGGCAAGGGGATTGAAGAAACATCTCAAGAGGCTTAATGCCCCAA
AGCATTGGATGCTTGACAAACTTGGTGGTGCCTTTGCCCCCAAGCCATCTTCTGGACCACACAAGTCGAGAGAGTGCCTTCCCCTT
GTCCTTATCATCCGTAACAGGTTTAAGTATGCTTTGACATACCGTGAGGTGATTTCTATCTTGATGCAAAGGCATATCCAAGTCGA
TGGGAAAGTCAGAACTGACAAGACATACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCAAAGACAAATGAGAACTTCCGTCTGC
TGTATGACACCAAGGGACGCTTCCGTCTTCACTCCATCAGAGACGAGGAAGCAAAGCTCAAGCTGTGCAAAGTGAGAACTATCCAG
CTTGGTCAGAAGGGAATCCCTTACCTGAACACATACGATGGTCGCACCATCCGTTACCCCGACCCGCCCATCAAGCCCGACGACAC
CATCAAGCTAGACCTCGAGGAGAACAAGGTTGTGGAGTTTATCAAGTTTGATGTAGGAAACGTTGTGATGGTGACTGGAGGAAGAA
ACAGAGGTCGTGTTGGTGTGATCAAGAACCGGGAGAAACACAAGGGAAGCTTCGAGACCATCCACATTCAAGACTCAACGGGGCAT
GAGTTTGCCACTAGGTTAGGGAATGTGTTCACTCTCGGGAAAGGAACAAAGCCGTGGGTGTTTCTTCCAAAGGGTAAAGGTATTAA
ACTTACCATCATTGAGGAAGCTAGGAAGAGGCTTTCTGCTCAACAAGCTGCTTGAAACTTTTTTTTCCTCTGTTTCAGAAAACCTA
TGCTCTGTTTTTGTTTTGTATCTTGCTATTGAGTTCCTTATTCTTAGACTTTCATGTCTTTGATTGCTATTGAGTTCCTTGTTTAA
TTCTTATACATTGAGGAAAAGGTTTGCTTCATCAGGTTTAGTTTAACACAATGTGTTTTAAAGCATACATACAAAAACTAACTTTG
AAATGTTTTGTATTATTAGAGTACCATAACTGATCCATAAGTTTAGAATTTATCAACGATAACACCAGGCCGTATAACCTCATAAG
CATCTCTGCTCCTGCTTTTCTTCATCCCTGCCGTGAAATACACCTTTGATGGGTCTGCTGAGATACAAGTCACTTTCACCCAAATC
ATCACTTTAGTTTTCTAGCCTTCCACTTCAGCTAGCTTTCCTTTCTCCAGGTAACCCGTCACCGTTGTCGAAAACCGCAGGACCGA
TGAATCCCTGTAACCAACCTCGCAGGTCTCGGGGATGAAGACAGTCAGCTTACCCGTCTCTTCGTTGAACTCGTAGTTCGTGGCGT
CCTGTGGAAAGATCCCAACAGGTAAACCAAATTCCTTTAGCAGACTCAGGCAATGGCTTCTGCATTTTTCCTTTGAGTTTGTTGAC
CAACCACTTGGTACCTCCTTCAATGCTGCTAGACAATGAATTGAAATCGTCGCCGACGGAGTTGAACTCTTTGTTTGCCTTTTGTC
CTAACCAATACGAGCCAACCTTGTTCAGTATCTGATCCATCTCTCCTCTGTAATAATTCGCACGAAGAGAGAGAGAGAAGTACCAC
CC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_565414 40S ribosomal protein S4-1 [Arabidopsis thaliana]13171e-142
XP_002884052 40S ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata]13161e-142
NP_568179 40S ribosomal protein S4-2 [Arabidopsis thaliana]13152e-142
BAB11167 40S ribosomal protein S4 [Arabidopsis thaliana]13106e-142
NP_200650 40S ribosomal protein S4-3 [Arabidopsis thaliana]13098e-142

Swiss-Prot top hits (Blast detail)Scoree value
Q93VH9 40S ribosomal protein S4-113174e-144
P49204 40S ribosomal protein S4-213157e-144
Q8VYK6 40S ribosomal protein S4-313093e-143
P46300 40S ribosomal protein S412654e-138
O22424 40S ribosomal protein S412361e-134

TrEMBL top hits (Blast detail)Scoree value
Q8LJW0 40S ribosomal S4 protein12773e-138
B9RG48 40S ribosomal protein S4, putative12683e-137
C6TN03 Putative uncharacterized protein12683e-137
C6TNY3 Putative uncharacterized protein12657e-137
Q2XPX5 40S ribosomal protein S4-like protein12657e-137

Arabidopsis top hits (Blast detail)Scoree value
AT2G17360.1 40S ribosomal protein S4 (RPS4A)13173e-145
AT5G07090.1 40S ribosomal protein S4 (RPS4B)13165e-145
AT5G58420.1 40S ribosomal protein S4 (RPS4D)13102e-144
AT5G07090.2 40S ribosomal protein S4 (RPS4B)12152e-133
AT5G37070.1 unknown protein5664e-058

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  43%
 
102  29%
 
92  29%

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