RadishBase

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Information for unigene UN19602

FASTA Sequence

Unigene ID: UN19602	Length: 898		SNP
GGAGAACAAAATTTGGAAGATTAGGTAGAAAGAAAGCGAAGGAAACAAACCGTATCTTCAGGCTTCAGCTTCAGCTATGGCGGCCG AGAATCCTCCTTCAAGCGCTGTAGACTTCGACACGAGTCTCGATTCCGGTTCAAACCACAACCCAAACGCTAATGATTTGACCAAT CAAGACTCTTCCAACGCACTGACACTCCCTTCTACCGCCGTTTGTCTCGGCCGTTTCGCCGGAGATGCTGCTGGCGGCGCCGTCAT GGGCTCTATATTCGGATATGGTTCTGGATTGTTTAAGAAGAAAGGATTTAAGGGATCATTTGCTGATGCGGGTCAGTCTGCAAAGA ATTTTGCAATTTTATCTGGAGTGCACAGTTTGGTTGTCTGTCTTCTCAAGAAACTGCGAGGGAAAGATGATGCCATTAACGTTGGA ATTGCTGGATGCTGCACTGGCCTTGCTCTTAGTTACCCCGGTGCACCACAAGCAATGCTACAGAGCTGTGTCACTTTTGGTGCCTT TTCTTTCATCCTCGAAGGACTTAACAAAAGGGAAACAGCTTTAGCTCACTCTGTCTACTTGAGACATGATGATCAAACCAGAAGTC TGAGAGATGATTTACCACTCTCTTTGGCTCTCCCCATCCATGAAGAGATCAAAGGAGCTTTCTCTTCTTTCTGCAAATCTTTAACT AAGCCCAAGAAGCTCGGCTTTCCCAGCTCACGTTGATTCAAGTTTTTGTTTTAATCCAACTACTTCCTTTTTGTAGATGTTAAAAG AACAGATGAAAACAAGAATCATGTTTCAAAAGTTTTCCATTCTATGTGTTCTCTCCAATGTGTTTTAGAATGGCCTTTGTCAATTA CCTAACAAATGAACTTCTGGATCACGTTTCACATTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002866099 protein translocase [Arabidopsis lyrata subsp. lyrata]	855	1e-089
NP_200362 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana]	827	3e-086
NP_567754 Tim17/Tim22/Tim23 pre-protein translocase of the mitochondrial outer membrane domain-containing protein [Arabidopsis thaliana]	803	2e-083
BAB08568 unnamed protein product [Arabidopsis thaliana]	795	1e-082
XP_002869598 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis lyrata subsp. lyrata]	791	4e-082

Swiss-Prot top hits (Blast detail)	Score	e value
Q6CRJ6 Mitochondrial import inner membrane translocase subunit TIM22	150	4e-009
Q75E80 Mitochondrial import inner membrane translocase subunit TIM22	146	1e-008
Q6FT37 Mitochondrial import inner membrane translocase subunit TIM22	146	1e-008
Q6BZY4 Mitochondrial import inner membrane translocase subunit TIM22	146	1e-008
Q2UAP8 Mitochondrial import inner membrane translocase subunit tim22	139	7e-008

TrEMBL top hits (Blast detail)	Score	e value
Q6NKU9 At5g55510	827	2e-086
Q94EH2 AT4g26670/F10M23_10	803	1e-083
Q9FJ60 Similarity to unknown protein	795	9e-083
Q9SZ09 Putative uncharacterized protein AT4g26670	780	5e-081
B9GJV9 Predicted protein (Fragment)	624	6e-063

Arabidopsis top hits (Blast detail)	Score	e value
AT5G55510.1 P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter	833	2e-089
AT4G26670.1 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	803	6e-086
AT1G18320.1 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	146	1e-009
AT3G10110.1 MEE67 (maternal effect embryo arrest 67); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter	145	1e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	6			43%


6	3			21%


10	1			7%


8	2			14%


12	2			14%

Unigene Members	Member information