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Information for unigene UN19618
| FASTA Sequence |
| Unigene ID: UN19618 | Length: 967 |
| SNP | GAAACATTAATCTAAGCTTTCAGATTCGCATATTAACCAAAAACAGCATGTCTTTTGCATTACTAACTTTTGAGTTTGGGAAAGTT
AGAAGCAACATTTAACAAACTCATTGACAAAAATCTTTTGGTACATTAGCTCTGAAGTTTATGAAGCACGACGATACTCTAGCTGT
TTGGTGTTTTCTTGAAGTACCTCGCGTACTCTCTCTGCAATCGCCTTGCAGCCTTCGGAAGCCAACGCAAACACCGTTTCAAATGT
TTCCATCGGTAACTTTGCATCCATCTGAAGGAGTGTCACTTTGTCTAGTTTAGGTAGAATGCCGACAGTTACATCAGCTCCTCCAG
CGCTATCTTCGACATAGTTGAGATCAAGAAGTGGAGTACTGTTCAAGTATCCAGCACTGCAGGATACAGCGAGATCACGCATCGGA
ATCCCAGCGTCTGCGAGAGCTAGCGTCGCAGCATTGATACAAGCTGATCTTGTTCCTCCAGCTTGTAGGACCTGAAGGAAAATGTC
AATCTGAGAATGAGGCAACAGTTCGGTTAATATGCAAGCTTCCATTGTCTGACGGATGACAAGAGATAGCTCTGTTGATCGCCTGT
CGTTTTTCTGTCTTCTACGATCACCAGTACTAAAATGAGCCATACTATACTCACAAAGCACCAATGCATGACCATTCTTTTGTTGG
CTCTTGTTTTGAATCTCTCTAGGGCCATAAACAGCTGCTATTACTTTGGTGTTACCCATCTCGAAAACAGCAGAGCCATCAGCCTT
GGAAACCACTCCAACTTCAGCTACGATTTGCCTCATCTCATTGAATCGTCGACCATCTAACCGAAGACCTTCAGGGTTTACGTACT
CCATTCTTTGTCAACTCTTTGCTGATATTTGCGGCGAGGATACGTCGGATGTTTGTGGACGGCGTCAACGAGAGGAGGATCGAAGT
CTGAGTGAGTGGGGAAACCTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878393 hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp. lyrata] | 1141 | 1e-122 |
| NP_191721 exosome complex component RRP41 [Arabidopsis thaliana] | 1137 | 3e-122 |
| XP_002320845 predicted protein [Populus trichocarpa] | 975 | 2e-103 |
| XP_002530509 Exosome complex exonuclease RRP41, putative [Ricinus communis] | 968 | 1e-102 |
| XP_002280302 PREDICTED: hypothetical protein [Vitis vinifera] | 965 | 3e-102 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9NPD3 Exosome complex exonuclease RRP41 | 557 | 3e-056 |
| C5A2B9 Probable exosome complex exonuclease 1 | 523 | 2e-052 |
| B6YSI2 Probable exosome complex exonuclease 1 | 522 | 3e-052 |
| Q8U0L9 Probable exosome complex exonuclease 1 | 521 | 4e-052 |
| O59223 Probable exosome complex exonuclease 1 | 516 | 2e-051 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SP08 Exonuclease RRP41 | 1137 | 2e-122 |
| A9PK13 Putative uncharacterized protein | 975 | 1e-103 |
| B9I8T9 Predicted protein | 975 | 1e-103 |
| B9SWZ0 Exosome complex exonuclease RRP41, putative | 968 | 9e-103 |
| A5BIU1 Putative uncharacterized protein | 965 | 2e-102 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61620.1 RRP41; 3'-5'-exoribonuclease/ RNA binding | 1138 | 1e-124 |
| AT3G61620.2 RRP41; 3'-5'-exoribonuclease/ RNA binding | 1138 | 1e-124 |
| AT4G27490.1 3' exoribonuclease family domain 1-containing protein | 254 | 3e-022 |
| AT3G46210.1 3' exoribonuclease family domain 1-containing protein | 114 | 6e-006 |
| AT3G46210.2 3' exoribonuclease family domain 1-containing protein | 114 | 6e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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