RadishBase

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Information for unigene UN19621

FASTA Sequence

Unigene ID: UN19621	Length: 746		SNP
TTTTTCATTCCAGAAACTTCTTATCAACCATGGCCCAAAATCAAAATCTGGTCGACTTAACCGAGAAACTAAGCTTGTCTTCGAGC AAGATAGTGTTAACCAGCTCCGACGGCGATTCTTTCGAGATCGACGAAGCAGTGGCTCGCAAATCCGAGACCATAGCTGAAATGCT CGAAGCCGGCTGTGCCGGAGAAATCCCGCTTCACAACGTCACCGGGGAGATCCTCGACAAAGTCATCGACTACTGCAAGACGCACG TCGAAGAAGCTGGTCCGTTTGAAGAAGAAGAAGATGAAGACAAAGAGGCGAAGAAGAAATGGGATGCGGAGTTCGTGAAAGTAGAT CTGGAAACCATGTTCGAGCTCATCCTGGCTGCTAACTATCTCAACATCCCAGGCCTTCTCGATCTTACATCCCAGGCGGTCGCAGA TCACATTAAAGACAAAACACCAGAGGATGTTCGCGAGATTTTCGGCATCGAGAACGATTTCACACCCGAAGAAGAAGAAGCTGTTC GCAAGGAGCACGCTTGGGCTTTTGAATGATTCTAGAATTAATAATAATGTTCTTAGATCTGTTGTGAATCTTGATTTGACTTGGCC TCTTTAGTTTCCAATGGGTATGTCTATCGTCTCTTTAATTTCAATGCTTGCAAAAACTCCGCCGGTGGAAGCTAGCTAGGGCTTCG CCGCCGTTTTCATAATATGATTAGGGTTTTTTTTAATAAAGAAAAGGTAATGTGGACC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002327737 predicted protein [Populus trichocarpa]	476	9e-046
XP_002269982 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]	475	1e-045
ABK92824 unknown [Populus trichocarpa]	473	2e-045
XP_002537506 skp1, putative [Ricinus communis]	473	2e-045
XP_002305525 predicted protein [Populus trichocarpa]	472	3e-045

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SY65 SKP1-like protein 18	519	4e-052
Q39255 SKP1-like protein 1A	462	2e-045
O81057 SKP1-like protein 14	453	2e-044
Q9LNT9 SKP1-like protein 4	450	4e-044
O65674 SKP1-like protein 12	446	1e-043

TrEMBL top hits (Blast detail)	Score	e value
A9P8M0 Predicted protein	476	6e-046
A5BBC4 Putative uncharacterized protein	475	8e-046
A9P8X1 Putative uncharacterized protein	473	1e-045
B9TGY7 Skp1, putative	473	1e-045
B9H1J1 Predicted protein	472	2e-045

Arabidopsis top hits (Blast detail)	Score	e value
AT1G10230.1 ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase	527	5e-054
AT2G03170.1 ASK14 (ARABIDOPSIS SKP1-LIKE 14); protein binding / ubiquitin-protein ligase	478	2e-048
AT1G75950.1 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase	463	1e-046
AT1G20140.1 ASK4 (ARABIDOPSIS SKP1-LIKE 4); protein binding / ubiquitin-protein ligase	451	3e-045
AT4G34470.1 ASK12 (ARABIDOPSIS SKP1-LIKE 12); protein binding / ubiquitin-protein ligase	447	9e-045

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	6			60%


11	2			20%


12	2			20%

Unigene Members	Member information