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Information for unigene UN19626
| FASTA Sequence |
| Unigene ID: UN19626 | Length: 754 |
| SNP | GGGTTGTTGGTTGGTTGGGTGATTGTGTTTCCTCGCTCTCTCCTCTCAGCCGCGTTCACTCTCTGAAACTCCCAAGAGAAATGAAT
TACCGTATCGGATTGATAACGGGTGGATCCAAGGATGTGGTGCGGAGAACGTTTGCAGCAGCAGCTGGTAAAGCGAAGAAAGGTGG
GAAAGGAGGAGGCAGCGATGCTCCTAAAGGATCGTCTCTGAGCAAAGAGATCAAATCCACTACCGTTGTTGGTGCTAACACTCTCA
AAGACGGGTCTGATCCCAAGATCCTTCCTGACTCTGACTACCCTGATTGGCTCTGGCGTCTTCTCCATATTCGACCTGCCCTTAGT
GAGCTCAGGAGGAAGAACGTCGAGACTCTTCCCTACGATGACCTCAAACGTTTTGTCAAGCTTGACACCCGTTCCAAAATCAAGGA
GAACAACTCCATCAAGGCCAAGAACTAAGAGAGATACCTTCCTTTGCCCCTTCTTTGATTTTGCTTAATCTTCTTTGAATGTAGTA
GTTGAGATTATTTGTCATCATCGTGCTCTTACTTCCAGTTATGTTACATTATCTGAGAGTCTATAAGTTTCTTATTAGACCCAAAT
AAGAATTGCTGTTTCATTTTACCGCTCTGCAGTTCAGAACTCTTTGGCTAATATTACTTTTTTTTTAGACCAAATGATATGTTCAA
CAAATGTAACACTATCTACCTTTTGTTAATTTTCTTACGGATAGAGTTGGATGGTTTTTAAAGATG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884262 hypothetical protein ARALYDRAFT_896070 [Arabidopsis lyrata subsp. lyrata] | 569 | 2e-056 |
| NP_566150 Mitochondrial ribosomal protein L37 [Arabidopsis thaliana] | 555 | 6e-055 |
| NP_196933 Mitochondrial ribosomal protein L37 [Arabidopsis thaliana] | 442 | 8e-042 |
| ABK28274 unknown [Arabidopsis thaliana] | 442 | 8e-042 |
| CAB87768 putative protein [Arabidopsis thaliana] | 436 | 4e-041 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9S799 F28J7.7 protein | 555 | 4e-055 |
| A0MFF9 Putative uncharacterized protein (Fragment) | 442 | 6e-042 |
| Q1PDW9 Putative uncharacterized protein | 442 | 6e-042 |
| Q9LYA0 Putative uncharacterized protein F18O22_80 | 436 | 3e-041 |
| C6SYP3 Putative uncharacterized protein | 423 | 9e-040 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G01740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37, mitochondrial (InterPro:IPR013870); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14290.1); Has 117 Blast hits to 117 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 22; Plants - 27; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | 556 | 2e-057 |
| AT5G14290.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37, mitochondrial (InterPro:IPR013870); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01740.1); Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 443 | 3e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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