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Information for unigene UN19627
| FASTA Sequence |
| Unigene ID: UN19627 | Length: 713 |
| SNP | AAAGCTCAAAGGATCTATTAAGGCAAAAGGTTCATTGCATTTTGTAACAGTCTTGTACCAAGTTTCTGATATTTATATACATTAAA
GGACTTTTTTTGTTTTACTAAATAGAGAGTCCTGGGAGGTGGAAAAATCTATACGAATTTTAATTAGTATATTCAGCAACCTCCAC
CGTCAGGTTCAACGGAACTGAGAAGGCCGTTACCACGCAGCTGCATACAGTGTTGCTCCGCGTCGGCCTGAGCACAGACGATGACA
ACAGCCAAACCGTTGATGTGGGCTTCTTGCATAATGTTGACTGCGTTGTCTACAGTCATGCCTGGTATGACCTTCATCAACACCTG
AACCACGTATTCCCTCTTGTTGAAGTTGTCGTTGTGTAGTATCACCCTGTAAGGTGGAGCCATCTTCTTTGATTTCCTCAAATCAA
ACTCGGATTCACGACCAGGAGTGGTTTTCTCTATAATTGGTTTGTCCAACACACCGCCTCCTTTACCCAATGCAGACTTAGTCATG
AGAACTCCACGATTGTTCACCCATGGTCCTTTTGAGACAGAATGTTTGTCCCCTGATTTGGAATTGAAGAGAGAGCTTGGTGCGAG
AGCTAATCTCCCACATATCACACTCTCCATGTCTTCTTCTCCTCCTCCGTCTATGCTTCTCACTTCTCAACACACACAGAGATAAT
CAGGACCGAACAATTTTCATCACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002888676 hypothetical protein ARALYDRAFT_894639 [Arabidopsis lyrata subsp. lyrata] | 751 | 1e-077 |
| NP_564937 ATP-dependent Clp protease adaptor protein ClpS [Arabidopsis thaliana] | 740 | 2e-076 |
| XP_002311446 predicted protein [Populus trichocarpa] | 650 | 6e-066 |
| XP_002281884 PREDICTED: hypothetical protein [Vitis vinifera] | 646 | 2e-065 |
| XP_002315955 predicted protein [Populus trichocarpa] | 640 | 8e-065 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q31QE7 ATP-dependent Clp protease adapter protein clpS | 238 | 2e-019 |
| Q5N3U1 ATP-dependent Clp protease adapter protein clpS | 211 | 2e-016 |
| Q3AUR5 ATP-dependent Clp protease adapter protein clpS | 187 | 1e-013 |
| Q7NML9 ATP-dependent Clp protease adapter protein clpS | 182 | 5e-013 |
| A2BYM5 ATP-dependent Clp protease adapter protein clpS | 175 | 3e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SX29 At1g68660/F24J5_4 | 740 | 1e-076 |
| A9P8C1 Predicted protein | 650 | 4e-066 |
| A5AM53 Putative uncharacterized protein | 646 | 1e-065 |
| B9HWL2 Predicted protein | 640 | 6e-065 |
| C6T435 Putative uncharacterized protein | 576 | 1e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G68660.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 513 Blast hits to 513 proteins in 129 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). | 741 | 7e-079 |
| AT1G68660.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein ClpS, core (InterPro:IPR003769), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719); Has 79 Blast hits to 79 proteins in 34 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | 447 | 9e-045 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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