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Information for unigene UN19640
| FASTA Sequence |
| Unigene ID: UN19640 | Length: 662 |
| SNP | GGATCACTAAAGATTCTCCGACTCTCTCTCGACTTCACAACATCGTCCCTCCGATTTGCTTCGCCGCCAAAGTTCTCTGAAGAGAT
CTTCGTTTCTCCGAAAGGGAACTTGTGTCGAAGACTCTTCTGCTCTACCATGTCAGGAAGAAAGGAAACGGTGTTGGATTTGGCTA
AGTTCGTTGACAAGGGTGTGCAAGTTAAGCTCACCGGTGGTAGACAAGTTACTGGAACTCTTAAGGGGTACGATCAGCTGCTCAAC
CTTGTTTTGGATGGGGCTGTAGAGTTTGTTCGAGATCATGATGATCCTTTGACGACCACTGACCAGACGAGACCCCTCGGTTTAAT
TGTTTGCCGTGGAACTGCGGTGATGCTCGTCTCACCAACGGATGGAACTGAAGAAATCGCTAACCCGTTTGTTCAGACAGAAGCTC
TCTAAAGAGTTTCTTCCAAAACCATTATGCATCTCTCTATTAGTTCAACTTGGAGTTTAGAGAGTTATGTATCTGCTGAGTATCTG
CCATAACGTTGGAAACTAATGTTTTCTTTATATACCTATTTTGGAACATCATAGGCTCCATCTTCGTGTCTTTGTTATAACTTTTC
CGACCAAACCTAAATTCAGTTGCTGTAATAAAATCAAGTAACTTCTCCGACCAAAAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002875234 hypothetical protein ARALYDRAFT_484298 [Arabidopsis lyrata subsp. lyrata] | 471 | 3e-045 |
| NP_178480 U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] | 465 | 1e-044 |
| XP_002299952 predicted protein [Populus trichocarpa] | 446 | 2e-042 |
| ACU14702 unknown [Glycine max] | 443 | 5e-042 |
| XP_002513176 conserved hypothetical protein [Ricinus communis] | 442 | 6e-042 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9UK45 U6 snRNA-associated Sm-like protein LSm7 | 304 | 3e-027 |
| Q9CQQ8 U6 snRNA-associated Sm-like protein LSm7 | 303 | 4e-027 |
| Q54HF6 Probable U6 snRNA-associated Sm-like protein LSm7 | 297 | 2e-026 |
| O74499 U6 snRNA-associated Sm-like protein LSm7 | 261 | 3e-022 |
| P53905 U6 snRNA-associated Sm-like protein LSm7 | 199 | 5e-015 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SI54 At2g03870 | 465 | 9e-045 |
| A9PBG1 Predicted protein | 446 | 1e-042 |
| C6SZM9 Putative uncharacterized protein | 443 | 3e-042 |
| B9RHF7 Putative uncharacterized protein | 442 | 4e-042 |
| D5AC71 Putative uncharacterized protein | 441 | 6e-042 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G03870.2 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | 466 | 5e-047 |
| AT2G03870.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | 466 | 5e-047 |
| AT2G23930.1 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) | 128 | 7e-008 |
| AT2G23930.2 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) | 111 | 7e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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