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Information for unigene UN19665
| FASTA Sequence |
| Unigene ID: UN19665 | Length: 934 |
SSR | SNP | CATACAACTTTTTGCAAGCCTAAGCTGTTGATACTTGTTAATACACACACACACACAGGTAGATTCAACAAGACTAAGTTCAAACA
AGAGCTTCCATTACACATGGGTATACATAAAACAGCTTACAGAATATGTACAACAGAATACCCCATCTCCGGTCTGAATCTGATGA
AGAATCAACCGTGACGCAGCCTAATTTCATAGTAAAAGCAGTAGTAGCTGTACACAACAACAACAAACATACCCCAAACCCAAAAA
AAAAAGAACTCTATACGAAGACGATCACCAAACATTAGAGGAAACCAGCTGGTCGTCTGGTGCGACAACAACAAGAGGAGTCCTAC
AGAGTGGGCAAGTGATGTTCCAGTAGTCTATCCATTTCTCCAAGCATGTTTTGTGAAACAAGTGGCCACATTTTAGCTTGTTGATC
TCTGAATCCTCTTCGAATTTCGACAGGCATACAGAACACTCGTTGTCCGCCTGTTTCTTGCACTTGCACAAGCTCTCAAACTTCAT
TGTGGGGGTCCTGTTCCTGAATTCTTCAAGGAAACTCTCAGGCTGGCAGACCCGGAAATCAAAAGTCTCTGATGTCTGATTCTCTG
AAGATGCGGCCGGCGCTACTGAAGAAGGAGAGAGACGGATTCCTACTAGCTGAAGCACTGATCTGACGATGCCTTTGAAGATGGAG
ATTGATAAGGCTGTGTTGACTAATAACACGCATAGCATTCCTTCTGATGGACCAGGAAGGCTTGATAGACCCATCTTTCAATATGT
TTCAAACAATAAGCCCGCAGGGAATGTTGATCAGATCTTTGTTCTTCTCAGAGAGATATAATCTGGTGACAAGTATGAGAGGCTAT
GATCACCGATTCAGAAGAAAGATTGAATCTTTATTATAAGGTTTTGTGTTTCTGGTAAAAGTAGTGATGGGAAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885748 hypothetical protein ARALYDRAFT_480074 [Arabidopsis lyrata subsp. lyrata] | 729 | 6e-075 |
| NP_178507 RING/U-box domain-containing protein [Arabidopsis thaliana] | 708 | 2e-072 |
| AAM19707 putative RING zinc finger protein-like protein [Eutrema halophilum] | 690 | 2e-070 |
| XP_002321207 predicted protein [Populus trichocarpa] | 539 | 7e-053 |
| XP_002533895 RING-H2 finger protein ATL3J, putative [Ricinus communis] | 531 | 6e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZT50 E3 ubiquitin-protein ligase RHA2A | 174 | 6e-012 |
| Q9ZU51 RING-H2 zinc finger protein RHA2b | 169 | 2e-011 |
| Q9SZL4 RING-H2 finger protein ATL4N | 144 | 2e-008 |
| Q641J8 E3 ubiquitin-protein ligase RNF12-A | 134 | 3e-007 |
| Q6ZNA4 E3 ubiquitin-protein ligase Arkadia | 134 | 3e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SI09 Putative RING zinc finger protein | 708 | 1e-072 |
| Q8S2S3 Putative RING zinc finger protein-like protein | 690 | 1e-070 |
| B9IAV8 Predicted protein | 539 | 5e-053 |
| B9T6M6 RING-H2 finger protein ATL3J, putative | 531 | 4e-052 |
| C6SVI3 Putative uncharacterized protein | 529 | 7e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G04240.1 XERICO; protein binding / zinc ion binding | 709 | 5e-075 |
| AT2G04240.2 XERICO; protein binding / zinc ion binding | 709 | 5e-075 |
| AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding | 181 | 9e-014 |
| AT1G15100.1 RHA2A; protein binding / ubiquitin-protein ligase/ zinc ion binding | 174 | 6e-013 |
| AT2G01150.1 RHA2B (RING-H2 FINGER PROTEIN 2B); protein binding / ubiquitin-protein ligase/ zinc ion binding | 169 | 2e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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