Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN19672

FASTA Sequence
Unigene ID: UN19672Length: 1303 SSR 
GGAGGGTTGTTCCACAAAGTTGACTCAGATCGGAGCCAGCTCCCTCTCTCGAGAACCAAAGAAGAAGAAGAAGGCCAATCATGTCT
AGGCAAGTCGCAGCAAGGCTTCTGGGATCTCTGTCTCGCCGTTGCTCAAGCACCAGCAACAGCAGCAGCTCTTAATTGTTTCCGAC
TCTCAGCTCATTGACTCAATCTCGCTCATTCGCGTCTGATCCTCCGCCTCCAGCTGCCGTATTCGTTGACAAAAACACCAGAGTCA
TGTGTCAAGGCATCACCGGAAAGAACGGAACTTTCCACACCGAGCAAGCCATTGAGTACGGCACCAAAATGGTGGCAGGAGTGACA
CCAAAGAAGGGTGGAACAGATCACTTAGGTCTCCCTGTGTTCAACTCTGTTGCTGAAGCCAAGGCTGAGACCAAAGCCAATGCCTC
TGTCATTTATGTTCCCGCGCCTTTCGCTGCTGCTGCTATTATGGAGGGTATTCAAGCTGAGTTGGATCTTATCGTCTGCATTACTG
AAGGAATCCCTCAACACGACATGGTACGTGTAAAGCATGCACTCAACAGTCAATCAAAAACTAGGCTGATTGGTCCAAACTGCCCT
GGGATTATCGAGCCTGGTGAATGCAAGATTGGTATTATGCCGGGGTACATCCACAAGCCTGGCAAGATTGGGATCGTCTCTCGTTC
TGGAACCCTGACATATGAAGCTGTTTTCCAAACAACAGCAGTTGGTCTAGGCCAATCTACTTGTGTAGGAATTGGTGGAGATCCTT
TTAATGGGACCAACTTTGTCGACTGCTTGGAGAAATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGA
GGCACTGCAGAAGAAGATGCTGCAGTTTTGATAAAGGAAAGTGGTACTGATAAGCCTGTTGTTGCTTTCATTGCTGGACTCACTGC
ACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTCCGGTGGGAAAGGTACAGCTCAGGACAAGATTAAGAGCCTAAATG
ATGCAGGAGTGAAGGTTGTTGAATCTCCAGCTAAGATAGGAGCGGCCATGTATGATCTCTTCAAAGAAAGAGGTCTTTTGAAGCAG
TGAAGTGAATTTCACTAGCTCACCTTTTTTTTCCATCTTGAAACCTTGGAGAAGTAAACAAAAAAAAGAAACCTAAGCCCTCGCCA
TTGATGGGTTGCACACCATTTTAGGGTTGTTTTTCTAAATCGATTTTGTTTTTGCAATTAAAGAGTGATAAATCAAAAGATTGAAT
AAATCGATTTTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871316 hypothetical protein ARALYDRAFT_487662 [Arabidopsis lyrata subsp. lyrata]16124e-177
NP_196447 Succinyl-CoA ligase [GDP-forming] subunit alpha-1 [Arabidopsis thaliana]16091e-176
XP_002872045 hypothetical protein ARALYDRAFT_489184 [Arabidopsis lyrata subsp. lyrata]15552e-170
NP_197716 Succinyl-CoA ligase [GDP-forming] subunit alpha-2 [Arabidopsis thaliana]15542e-170
AAM65450 succinyl-CoA synthetase, alpha subunit [Arabidopsis thaliana]15499e-170

Swiss-Prot top hits (Blast detail)Scoree value
P68209 Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial16094e-178
Q8LAD2 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial15541e-171
Q6ZL94 Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial13901e-152
P13086 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial11255e-122
P36967 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial11239e-122

TrEMBL top hits (Blast detail)Scoree value
A9PFB5 Putative uncharacterized protein14511e-158
B9N355 Predicted protein14422e-157
B9RL91 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial, putative14412e-157
B9RL90 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial, putative14376e-157
A9PDB9 Putative uncharacterized protein14368e-157

Arabidopsis top hits (Blast detail)Scoree value
AT5G08300.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative16103e-179
AT5G23250.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative15549e-173
AT5G23250.2 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative13479e-149
AT5G49460.1 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase2662e-023
AT3G06650.1 ACLB-1; ATP citrate synthase2634e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  50%
 
91  25%
 
81  25%

Unigene MembersMember information