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Information for unigene UN19672
| FASTA Sequence |
| Unigene ID: UN19672 | Length: 1303 |
SSR | | GGAGGGTTGTTCCACAAAGTTGACTCAGATCGGAGCCAGCTCCCTCTCTCGAGAACCAAAGAAGAAGAAGAAGGCCAATCATGTCT
AGGCAAGTCGCAGCAAGGCTTCTGGGATCTCTGTCTCGCCGTTGCTCAAGCACCAGCAACAGCAGCAGCTCTTAATTGTTTCCGAC
TCTCAGCTCATTGACTCAATCTCGCTCATTCGCGTCTGATCCTCCGCCTCCAGCTGCCGTATTCGTTGACAAAAACACCAGAGTCA
TGTGTCAAGGCATCACCGGAAAGAACGGAACTTTCCACACCGAGCAAGCCATTGAGTACGGCACCAAAATGGTGGCAGGAGTGACA
CCAAAGAAGGGTGGAACAGATCACTTAGGTCTCCCTGTGTTCAACTCTGTTGCTGAAGCCAAGGCTGAGACCAAAGCCAATGCCTC
TGTCATTTATGTTCCCGCGCCTTTCGCTGCTGCTGCTATTATGGAGGGTATTCAAGCTGAGTTGGATCTTATCGTCTGCATTACTG
AAGGAATCCCTCAACACGACATGGTACGTGTAAAGCATGCACTCAACAGTCAATCAAAAACTAGGCTGATTGGTCCAAACTGCCCT
GGGATTATCGAGCCTGGTGAATGCAAGATTGGTATTATGCCGGGGTACATCCACAAGCCTGGCAAGATTGGGATCGTCTCTCGTTC
TGGAACCCTGACATATGAAGCTGTTTTCCAAACAACAGCAGTTGGTCTAGGCCAATCTACTTGTGTAGGAATTGGTGGAGATCCTT
TTAATGGGACCAACTTTGTCGACTGCTTGGAGAAATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGA
GGCACTGCAGAAGAAGATGCTGCAGTTTTGATAAAGGAAAGTGGTACTGATAAGCCTGTTGTTGCTTTCATTGCTGGACTCACTGC
ACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTCCGGTGGGAAAGGTACAGCTCAGGACAAGATTAAGAGCCTAAATG
ATGCAGGAGTGAAGGTTGTTGAATCTCCAGCTAAGATAGGAGCGGCCATGTATGATCTCTTCAAAGAAAGAGGTCTTTTGAAGCAG
TGAAGTGAATTTCACTAGCTCACCTTTTTTTTCCATCTTGAAACCTTGGAGAAGTAAACAAAAAAAAGAAACCTAAGCCCTCGCCA
TTGATGGGTTGCACACCATTTTAGGGTTGTTTTTCTAAATCGATTTTGTTTTTGCAATTAAAGAGTGATAAATCAAAAGATTGAAT
AAATCGATTTTGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002871316 hypothetical protein ARALYDRAFT_487662 [Arabidopsis lyrata subsp. lyrata] | 1612 | 4e-177 |
| NP_196447 Succinyl-CoA ligase [GDP-forming] subunit alpha-1 [Arabidopsis thaliana] | 1609 | 1e-176 |
| XP_002872045 hypothetical protein ARALYDRAFT_489184 [Arabidopsis lyrata subsp. lyrata] | 1555 | 2e-170 |
| NP_197716 Succinyl-CoA ligase [GDP-forming] subunit alpha-2 [Arabidopsis thaliana] | 1554 | 2e-170 |
| AAM65450 succinyl-CoA synthetase, alpha subunit [Arabidopsis thaliana] | 1549 | 9e-170 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P68209 Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial | 1609 | 4e-178 |
| Q8LAD2 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial | 1554 | 1e-171 |
| Q6ZL94 Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 1390 | 1e-152 |
| P13086 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 1125 | 5e-122 |
| P36967 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 1123 | 9e-122 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PFB5 Putative uncharacterized protein | 1451 | 1e-158 |
| B9N355 Predicted protein | 1442 | 2e-157 |
| B9RL91 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial, putative | 1441 | 2e-157 |
| B9RL90 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial, putative | 1437 | 6e-157 |
| A9PDB9 Putative uncharacterized protein | 1436 | 8e-157 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G08300.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 1610 | 3e-179 |
| AT5G23250.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 1554 | 9e-173 |
| AT5G23250.2 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 1347 | 9e-149 |
| AT5G49460.1 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase | 266 | 2e-023 |
| AT3G06650.1 ACLB-1; ATP citrate synthase | 263 | 4e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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