RadishBase

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Information for unigene UN19678

FASTA Sequence

Unigene ID:UN19678

Length: 1407

GGGGCTAGTCAACAATGTCGACCAAACTTTTCTAATTCTAGAAAGTAACACAAAGCTTCTTCCTCTTCTTTATTCTTTTTTCATAT
AAATGCATTACTATTTTTGACCACTCCACGTTCTTGGTGGAGCGCGCATTACACACTGCGTCAGAATCGAATCTCACGCGTCTTTT
CTTTAGCTTTTAGTTCTTCGAGCCCACAAGAATCCCATATCCGATTCGTGGGTCCATCCTTACAGATGTGGTCGGTGGTGGGTGGT
TTGAGGCGTACGGCGTTTTCCGCCGTGAGTAAAGGTTCTCCGACAAGGTCATTGCTCGGCGGTGGTTACAGATGTCTGACCGTCGA
ACCAACAACGGAGAAGGGGGAGGAGATAACTGTAACGGAAGCGAAGAAGCTAATGAGGTTAGTGAATGTTGATGAGATGAAGAAGA
AGCTCGGTTGTATGGGGAATGAAGAAACTGTCTCTTACACTAAACTCATTGAAGCATCTCAAGGTTTAGGTATCGCTAGATCTCTC
CACGAAGCTCACGCCTTCGCTCGTATTCTCGATGATGCTGGTGTGATTTTAATTTTCCGTGATAAAGTCTATCTTCATCCTCATAA
GGTGGTGGAGTTGATTAGAAAGGCAGTGCCTTTAGGTTTAAATCTAGAGGATGATCCAGCTAAAGTCGAGTTCGATAAGCTTAGGA
GAATGAAGGAAGAGATTGATGTGTTAGCACATAAGCAAGTGAGGAAGATTCTGTGGTGTGGTCTTGGTTACTCTGTGGTTCAGATC
GGTCTGTTTTTCAGGCTAACTTTCTGGGAGTTTTCATGGGATGTGATGGAACCCATTACGTTTTTCACTACAGCGACTGGGATTAT
TGTTGGTTATGCTTATTTCTTGATGACTTCGAGGGACCCAACTTATCAAGATTTCATGAAGAGGTTGTTTCTTTCTAGGCAGAGGA
AGTTGCTCAAGAGTCGCAACTTCGATGTTGAGAGGTTTAAGGAACTTGAGAAGAAGTCGTCTTGCTCTTCTTCTTCTTCCCATCAC
TCGTGCCACGCCAACGCATCGATTCGGAAATGTGTTGGGGTTGATCTTGATTTAGAGGATTCTTTGCATAGTCGCAGGGACTGATT
CACTCGGTTTCTGGTTTTCTAACCATTATTCACTTTTGATTCTATATACTTGAACCAATGTTACTGGAGGTTCTTCTTCATGTTTA
ATTCTTTTGGTGTTCGCAGAAAAAGGATCCAAATGATGTTTTACTTTTGCAAGTAGTCAATCGAGATGGATAAAGAAACTTAGGGG
GGTGTATTCAACCGAGAGTTTCAGATGATTTGTATTAAAACGATAAATTCAATGTTATTCAAACATGAATTTTAAAAACCTATTTA
AAATCTACTGTTATTGAACTTGACATTTCGG

Annotation(GO term)

GenBank top hits (Blast detail)	Score	E value
NP_176074 uncharacterized protein [Arabidopsis thaliana]	1117	1e-119
AAG50752 hypothetical protein [Arabidopsis thaliana]	1093	7e-117
XP_002894678 hypothetical protein ARALYDRAFT_474846 [Arabidopsis lyrata subsp. lyrata]	1090	2e-116
NP_563846 uncharacterized protein [Arabidopsis thaliana]	988	1e-104
XP_002892511 predicted protein [Arabidopsis lyrata subsp. lyrata]	981	7e-104

Swiss-Prot top hits (Blast detail)	Score	E value
Q8NE86 Coiled-coil domain-containing protein 109A	225	1e-017
Q3UMR5 Coiled-coil domain-containing protein 109A	225	1e-017
Q08BI9 Coiled-coil domain-containing protein 109A	222	3e-017
Q810S1 Coiled-coil domain-containing protein 109B	205	3e-015

TrEMBL top hits (Blast detail)	Score	E value
Q8VYR0 Putative uncharacterized protein At1g57610	1117	8e-120
Q9FVU1 Putative uncharacterized protein T8L23.8	1093	5e-117
O80539 F14J9.24 protein	848	1e-088
B9SK68 Putative uncharacterized protein	800	5e-083
A8MR98 Uncharacterized protein At1g57610.3	797	1e-082

Arabidopsis top hits (Blast detail)	Score	E value
AT1G57610.1 unknown protein	1117	5e-122
AT1G57610.2 unknown protein	1117	5e-122
AT1G09575.1 unknown protein	1009	2e-109
AT1G57610.3 unknown protein	797	6e-085
AT2G23790.1 unknown protein	414	1e-040

EST library breakdown for ESTs in the assembly


12	3			33%


8	2			22%


11	2			22%


9	2			22%

Unigene Members