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Information for unigene UN19684
| FASTA Sequence |
| Unigene ID: UN19684 | Length: 1360 |
| SNP | TTAGACAAACGTGAAATAGTCCGAGCTAGAGAAGTTTGTCTTGATGAGAAATGGAAGCTCAAATTCTGTTTCTCTATTTCTCACTC
CTCGTTCTCTCTCTAAATTTCTTATTTCAGTATATCAAACCAAGGCTAAGCCGCATGTTCCAGCCTTCTCTTGAAACTCAAGCCAA
GGCCGCCATTTTATCAAGAAAAGAAGTAGCCGAGTTTCTTGATTCTCCCATTGTGGAAGTAGTAGAAGATGAAGATATAAATACAA
CTTCTAGTTCCACGTTCGATTTTGATCCATACATGACGAGTAAAGCCGATGCAGTGAACAAAGCTCTAGAAGAAGCCATACCTGTC
GGGGAGCCACTCAAGATCCACGAAGCCATGCGTTACTCGGTTCTTGCAGCCGGTAAACGTGTAAGGCCTATTCTCTGCCTCGCTTC
TTGTGAGCTAGTAGGCGGCGAAGAAACGCCGCGATGCCAGCGGCTTGTGCGGTTGAGATGATCCACACCATGTCTCTTATCAAAGA
CGACTTGCCTTGTATGGACAATGACGATCTGCGTCGTGGGAAGCCCACCACTCACAAAGCCTACGGCGAAGGAGTCGCCATTCTCT
CCGGAGGAGCTCTCTTGTCTCTTGCGTTTGAGCACATGACAACGGCGGAGATATCCTCGGATAGAATGGTTTGGGCGGTCAGGGAA
CTGGCTAGGTCCATTGGAACTAGAGGGTTAGTCGCGGGACAAGCCAAGGACATAAGTAGTGAAGGTTTGGAGTTGAACGACGTCGG
TTTAGAGCATTTGGAGTTTATCCATGTACACAAAACTGCTGTTTTGTTGGAAACTGCTGCGGTTCTTGGAGCCATTATTGGTGGTG
GATCTGATGAAGAGATTGAGAGTGTAAGAAAGTTTGCCAGGTGCATTGGATTGTTGTTTCAGGTGGTGGATGATATTTTGGACGAG
ACCAAGTCGTCGGAGGAATTGGGAAAAACCGCCGGAAAAGATCAGCTACTTGGAAAGCTGACGTACCCCAAGCTGATGGGGTTGGA
GAAATCCAAAGAATTTGTTAAGAGATTGACTATAGATGCACGTCAACATCTTCATGGGTTTACTACGGAGAAGGTGGCACCTTTAG
TAGCTCTTACTAATTTTATTGCCAATAGAAATAAATGAAATGTTATGTCTTTTAGAACTTTGATTGTTTGTTTTGTTGTGTCGGGT
TTATGTATACATGCTAAAACAGTGTGCTTACTTTTAACTTTTAAGTGTAACCATGTTTTTATATTTTTATTTAAAATTCAAAAAGG
GAAAAACCGGAAAAAAAAATCTATTTGCCTCTTTTGTATATTAGATAATAAAGAACGGCTTTCTGAGAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880528 geranylgeranyl pyrophosphate synthase [Arabidopsis lyrata subsp. lyrata] | 1119 | 7e-120 |
| BAA19583 geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana] | 1115 | 2e-119 |
| NP_179960 geranylgeranyl pyrophosphate synthase 4 [Arabidopsis thaliana] | 1115 | 2e-119 |
| AAB67730 pregeranygeranyl pyrophosphate synthase [Arabidopsis thaliana] | 1098 | 2e-117 |
| NP_179454 geranylgeranyl pyrophosphate synthase 3 [Arabidopsis thaliana] | 950 | 3e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O04046 Geranylgeranyl pyrophosphate synthase 2 | 1115 | 8e-121 |
| Q9SLG2 Geranylgeranyl pyrophosphate synthase 4 | 950 | 1e-101 |
| Q43133 Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic | 879 | 2e-093 |
| P34802 Geranylgeranyl pyrophosphate synthase 1, chloroplastic | 867 | 5e-092 |
| Q9LUD9 Geranylgeranyl pyrophosphate synthase 3, chloroplastic | 794 | 1e-083 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B6DVJ8 Geranylgeranyl pyrophosphate synthase 2 | 1115 | 1e-119 |
| A0MEM8 Putative uncharacterized protein (Fragment) | 950 | 2e-100 |
| Q0WUL9 Geranylgeranyl pyrophosphate synthase | 867 | 8e-091 |
| Q8LAW5 Geranylgeranyl pyrophosphate synthase | 850 | 7e-089 |
| A0MEM7 Putative uncharacterized protein (Fragment) | 847 | 2e-088 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G23800.1 GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase | 1116 | 6e-122 |
| AT2G18640.1 GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase | 950 | 1e-102 |
| AT4G36810.1 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase | 868 | 3e-093 |
| AT2G18620.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative | 848 | 7e-091 |
| AT3G14510.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative | 809 | 2e-086 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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