RadishBase

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Information for unigene UN19705

FASTA Sequence

Unigene ID: UN19705	Length: 773		SNP
GATGGGTAAAATTTACTCTTTTGAAAGCATTAATTAACAAGGATACATATATTCAACTGATAGACTGAAAATATATGAAACCTCGA GATTTATCACACGTAATTAACAACATCAAAGCATATCAAAATACCCAAACAGCAATATATTGTAACTGATGAACCATACAAGAGCC CCATTTATTATAACATAATACGAAGGCGCGCGCACACAAACACACACAAAGGCAGCCATATATAACGGTGGGGGATCTGGTGATGA TGGTTTGAAACGGACTTAGGATTTGATAACGTGGTGATCCATGTCCGCAGCGAGGCTCTTGACGAACTTCATGTAGTTGATGGGTT CAGGCGAGTCATCGGTTCGCTTCTCCCATATCATAGTGACCTTGCAGACTATATCACTAGGCGACTTTTGAATGAACTGAAAGGTG ACGTCATACACTTTAAGCTGCTCCATTACGTGACCTTCGAGCCCTTTGAGCGTTACCGCCATATTCTCATCGTCATTCTCTCTCCT CTCCTTGAACACCTCTTGTTTCCCATCGCATGTGTAGTTCCAAATCTTGATGGATCCATGAGAGTCCCATTCACCATCGTGGACGG TGACACCTTGAATGAGGTGGCCAATGGCGTCGGGGAAGAGATGGTTCTCATTCTTCCACCTCTTGTAGTGTTTCTCCGCCGATCCT TTCAAAGGAACCTCCGTCACATATGTTCCTGACGTCGCCATCTCTGATCTTTCTTTTTTTGTTTTTGTTCTTTTGGCTTTTGAAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_565264 MLP-like protein 328 [Arabidopsis thaliana]	732	2e-075
XP_002875203 hypothetical protein ARALYDRAFT_322644 [Arabidopsis lyrata subsp. lyrata]	732	2e-075
XP_002875076 hypothetical protein ARALYDRAFT_904347 [Arabidopsis lyrata subsp. lyrata]	727	8e-075
XP_002870338 hypothetical protein ARALYDRAFT_493506 [Arabidopsis lyrata subsp. lyrata]	716	1e-073
NP_565265 MLP-like protein 329 [Arabidopsis thaliana]	708	1e-072

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZVF3 MLP-like protein 328	732	9e-077
Q9ZVF2 MLP-like protein 329	708	6e-074
Q9SSK7 MLP-like protein 34	209	4e-016
Q9SSK9 MLP-like protein 28	179	1e-012

TrEMBL top hits (Blast detail)	Score	e value
C0SV41 Putative uncharacterized protein At2g01530 (Fragment)	708	9e-073
O23267 AT4g14060/dl3070w	707	1e-072
Q39132 At1g14950/F10B6_18	664	1e-067
B2WS86 Major latex-related protein	632	6e-064
Q8LDJ8 Major latex protein, putative	631	7e-064

Arabidopsis top hits (Blast detail)	Score	e value
AT2G01520.1 MLP328 (MLP-LIKE PROTEIN 328); copper ion binding	733	7e-078
AT2G01530.1 MLP329 (MLP-LIKE PROTEIN 329); copper ion binding	709	4e-075
AT4G14060.1 major latex protein-related / MLP-related	708	5e-075
AT1G14950.1 major latex protein-related / MLP-related	664	7e-070
AT4G23680.1 major latex protein-related / MLP-related	628	1e-065

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	14			31%


9	12			27%


12	3			7%


8	2			4%


10	5			11%


20	3			7%


7	5			11%


11	1			2%

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