 |
Information for unigene UN19710
| FASTA Sequence |
| Unigene ID: UN19710 | Length: 1185 |
| SNP | AGTTAACTACGAGTTGGGTAGATATAAATTGATTAAATAAACTTCCAAGTATTCGAAACATTGCTTATGTATTAAAGACGAACATA
ACATCTTCTGATCTTAATCCGACCAAAACCAAACCAACAGACAAACAGTCTGATAAACAAGAAGCCATAGCAGGAAAGACGAAAAT
GAGAAGAGTTTACGAAGGACTCGAGACATTTTCTAAGTGGGTCTTGGAGTGGCCCACTCAACCCTGAGGATGAGGTTATCATAACC
ATAACCATTCAGCTTGTTGATGGCTCGTTGAGCGTCTTCTCTGCTCACGAAATTGACGAAACCAAACCCTCTGCTCACTCCAGTTT
TCTGATCAATCGCCACATAGACACGGGAGACAGCTCCAAACGGATGGAAGAGCTCCATCAAATCGGGTTCACGGGTGTCCTCAGAC
AAGTTAGTCACACGCACAGAGTTCTCATCGTTCCTCCTCCTCATGTCCGAACCACCAGTGCTTCTGTCTGCACCTGCTCTCATGCT
AGGAGGCACATAAGCGGCCTTGCCACCAGGTGCAGCGGGTACGGCAGATGTTTCTCCTGTGGGTGGCTTGTCGACAAAGACATCGG
TTGGTGCAGCTAGATCCTTGTAAGGACATTTTGATGTCCAATGGTCACCTTTCTTGCCGCATGTCCTGCAAACCATGAGGACTGCA
CCTTTACTCAGCTGAGACAAGCCGTCTCCTGCTGCCTTTGATTCATCTGCTTTGGTACCAGGAGCCCTAGGTCGTTCCAGAAGAAT
CTCTTCGGTCGAAACCATGGTGAGATGGCTACCAGCGTCCTCGTTCGCGGCGTCTCCGAACTTAGGCCAGCTCCTCCGCTCCATGG
CTCGTTTGTTGAGCCTCGCGGAAGCTAGCTTACGGACGCGTGACCTGGTCGTGATCTTGACCTTGTTGCCTTCGTCGTTGAACTTG
TACTCGATCACCGTCTTCAACCCGTTCTCGTCTGGGCCGATCACCTGCTTCGGAGGGAGAAGGAAATCCAGATCGTCGTCTTCGTC
CATCTCGCCCCATCGGAACTTGCTCGTTTTCTGCTGCGAATCGGTCGTCGTCATCTTTCTCGTTTTTTGGATGGATTGTCAGATGC
GCCGCTTCTTGTGGTTCGATGATGAATGATGCGCTTAGGGTTTGGGGATCTTATCTGGTGCTTCTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAG53636 initiation factor 3g [Arabidopsis thaliana] | 1420 | 7e-155 |
| NP_187747 translation initiation factor eIF-3 subunit 4 [Arabidopsis thaliana] | 1412 | 6e-154 |
| XP_002878024 initiation factor 3g [Arabidopsis lyrata subsp. lyrata] | 1403 | 7e-153 |
| XP_002882728 initiation factor 3g [Arabidopsis lyrata subsp. lyrata] | 1389 | 3e-151 |
| XP_002312117 predicted protein [Populus trichocarpa] | 1206 | 5e-130 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6DRC4 Eukaryotic translation initiation factor 3 subunit G | 492 | 1e-048 |
| A7SKE9 Eukaryotic translation initiation factor 3 subunit G | 480 | 3e-047 |
| P78795 Eukaryotic translation initiation factor 3 subunit G | 459 | 8e-045 |
| Q1DPD9 Eukaryotic translation initiation factor 3 subunit G | 450 | 9e-044 |
| B4MA85 Eukaryotic translation initiation factor 3 subunit G-1 | 443 | 6e-043 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C5Y9 Initiation factor 3g | 1420 | 5e-155 |
| Q9SSJ0 AT3g11400/F24K9_7 | 1412 | 4e-154 |
| A9P7U1 Predicted protein | 1206 | 3e-130 |
| B9HT66 Predicted protein | 1192 | 1e-128 |
| B4FBV8 Eukaryotic translation initiation factor 3 subunit 4 | 1145 | 4e-123 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G11400.1 eukaryotic translation initiation factor 3G / eIF3g | 1413 | 2e-156 |
| AT5G06000.1 EIF3G2; RNA binding / translation initiation factor | 1030 | 4e-112 |
| AT3G11400.2 eukaryotic translation initiation factor 3G / eIF3g | 862 | 1e-092 |
| AT1G54080.1 oligouridylate-binding protein, putative | 156 | 1e-010 |
| AT3G14100.1 oligouridylate-binding protein, putative | 155 | 1e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
