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Information for unigene UN19770

FASTA Sequence
Unigene ID: UN19770Length: 1065  SNP
GGCTAAATAAATCAATTAAACAGCACATCAGATTTAGCAAAGAAGCGGAGAAAAAGATCTGAATCGTCGTCAAAAACAAAAGAAGG
AAAAAAAGAAAACCCTAACGTTCGTTCGTTCGTTCACAGATCTCGAGAGATGAAAGGTGGTGAAACCAAGGCTCAAGCGAAGAGCA
CCGACGAGAGATTGAAAACGAGAGGGAAGAAAGCGGGGAAGAAAGTGAAGGATCCAAACAAGCCAAAGAGGCCGCCAAGTGCTTTC
TTCGTCTTCCTGGAGGGATTCCGGAAGGAGTTCAATCTAGCTAACCCTAACAACAAATCCGTCGGAGCTGTTGGTAAAGCTGCTGG
AGCCAAATGGAAATCCATGACTGCTGATGATAAAGCGCCTTATGTAGAAAAGGCTGAGACCAAAAAGACTGAATACGCCAAGACTA
TGCAAAAATACAACATGAAATTGGCTAATGGAACGAGTACAGCTGGAGATGATGACTCTGACAAGTCCAAGTCTGAAGTCAACGAT
GAGAATGATGCTGCTAGTGATGAGGAGGAAGATGATGATTAAGAGATGGATCAGCAGCTGTTTGTTTAATGGAGTATCTTCTCTTC
TTATGTGTTAGCTCTACTAGTTTTAGGGAGAAGAATAGTTTTACTCTATTGCTATGTTTTCCCTTGTTTTATGTTGTTAACTGGGA
TTTAATTCACATCTCTTACTTCAACTCCTCATCATAACTTTGGATTTAGCTTTGAACTTTGTTTCTAGTTTTATGAGATATGGTAT
TACTGTGTTTGCTTCAAACTCTATCTTTCCTCTCTATCGATTGGTGAATAGTCGAATAGACTTTTCTACAAAGTTAGTTATCCTTT
TGCGGGCTTACAGGTTGAATTTTTGGGTTTAAAGTAGGAAAGAAAGTTTGAAAAGCTCATCGAAAGTGTCAGTATAAAACTTTTAG
AGAAGCTATCTACAACAACAAATCACATTCTGAGTTCTTTAAGATAATTAATTGTTTTGAAACAAATATTAATTCAAACAAAGAAA
TCAACATAGTGCTATGATTTGAACTGCTCTGTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002886121 hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp. lyrata]5433e-053
NP_179347 high mobility group B4 protein [Arabidopsis thaliana]5093e-049
CAA74403 HMG protein [Arabidopsis thaliana]5083e-049
NP_001077909 high mobility group B4 protein [Arabidopsis thaliana]5074e-049
AAM64404 putative HMG protein [Arabidopsis thaliana]5074e-049

Swiss-Prot top hits (Blast detail)Scoree value
P40619 HMG1/2-like protein3818e-036
P26585 HMG1/2-like protein3801e-035
P27347 DNA-binding protein MNB1B3656e-034
P40620 HMG1/2-like protein3602e-033
P40621 HMG1/2-like protein2966e-026

TrEMBL top hits (Blast detail)Scoree value
Q42344 HMG1-like protein5092e-049
O49598 HMG protein5082e-049
B9DG70 AT2G17560 protein5073e-049
Q8LCY0 Putative HMG protein5073e-049
Q94K96 Putative HMG protein5047e-049

Arabidopsis top hits (Blast detail)Scoree value
AT2G17560.1 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5152e-052
AT2G17560.2 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5152e-052
AT2G17560.3 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5091e-051
AT4G35570.1 HMGB5 (HIGH MOBILITY GROUP B 5); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor4472e-044
AT1G20696.1 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor3782e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  27%
 
113  20%
 
92  13%
 
65  33%
 
181  7%

Unigene MembersMember information